
Instructions for running RNAeyes:

See README.build for build instructions.  After successfully building
from the source, locate the result jar file, which will be called
"rnaeyes-<version>.jar".

   # java -jar rnaeyes-<version>.jar -f

The '-f' arg at the end is needed in order to run the "flatfile"
version.  Without '-f' it will try unsuccessfully to attach to our
database.

For a sample input file, try:

   ./docs/samples/smallTestSet.txt


