Transcript: Mouse NM_001286182.1

Mus musculus lysyl oxidase (Lox), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Lox (16948)
Length:
4494
CDS:
75..1310

Additional Resources:

NCBI RefSeq record:
NM_001286182.1
NBCI Gene record:
Lox (16948)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001286182.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000321077 CAATGATGATGAGCCTATATT pLKO_005 1697 3UTR 100% 15.000 12.000 N Lox n/a
2 TRCN0000011851 CGTCCAGAAGATGTCTATGTA pLKO.1 737 CDS 100% 5.625 4.500 N Lox n/a
3 TRCN0000321003 CGTCCAGAAGATGTCTATGTA pLKO_005 737 CDS 100% 5.625 4.500 N Lox n/a
4 TRCN0000293898 AGACTGCCAGTGGATTGATAT pLKO_005 1133 CDS 100% 13.200 9.240 N LOX n/a
5 TRCN0000045990 CTGCACAATTTCACCGTATTA pLKO.1 1289 CDS 100% 13.200 9.240 N LOX n/a
6 TRCN0000286463 CTGCACAATTTCACCGTATTA pLKO_005 1289 CDS 100% 13.200 9.240 N LOX n/a
7 TRCN0000011850 GCTGCACAATTTCACCGTATT pLKO.1 1288 CDS 100% 10.800 7.560 N Lox n/a
8 TRCN0000321076 GCTGCACAATTTCACCGTATT pLKO_005 1288 CDS 100% 10.800 7.560 N Lox n/a
9 TRCN0000011848 CCACTTTATGTATGCTTCATT pLKO.1 4191 3UTR 100% 5.625 3.938 N Lox n/a
10 TRCN0000011849 CCTGGATGTTATGACACCTAT pLKO.1 1101 CDS 100% 4.950 3.465 N Lox n/a
11 TRCN0000011852 GCCTGAATCAGACTACACTAA pLKO.1 1214 CDS 100% 4.950 3.465 N Lox n/a
12 TRCN0000321012 GCCTGAATCAGACTACACTAA pLKO_005 1214 CDS 100% 4.950 3.465 N Lox n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286182.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00948 pDONR223 100% 83.6% 86.3% None (many diffs) n/a
2 TRCN0000477950 CTAATTATTTTGGGTCCGCAGTTC pLX_317 37.2% 83.6% 86.3% V5 (many diffs) n/a
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