Transcript: Mouse NM_011277.2

Mus musculus ring finger protein 2 (Rnf2), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Rnf2 (19821)
Length:
3028
CDS:
108..1118

Additional Resources:

NCBI RefSeq record:
NM_011277.2
NBCI Gene record:
Rnf2 (19821)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011277.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000218290 ATGCCACTGTTGATCACTTAT pLKO_005 865 CDS 100% 13.200 18.480 N Rnf2 n/a
2 TRCN0000257390 TAAGGCCAGACCCGAACTTTG pLKO_005 406 CDS 100% 10.800 15.120 N Rnf2 n/a
3 TRCN0000040578 CCGAGTAACAAACGGACCAAA pLKO.1 681 CDS 100% 4.950 6.930 N Rnf2 n/a
4 TRCN0000218768 GTAATCTGTGCCATAAGATTT pLKO_005 2711 3UTR 100% 1.320 1.056 N Rnf2 n/a
5 TRCN0000426500 ATGACTACAAAGGAGTGTTTA pLKO_005 291 CDS 100% 13.200 9.240 N RNF2 n/a
6 TRCN0000226018 TGAGAAGCAGTACACCATTTA pLKO_005 968 CDS 100% 13.200 9.240 N Rnf2 n/a
7 TRCN0000433603 CCCTTAGAAGTGGCAACAAAG pLKO_005 343 CDS 100% 10.800 7.560 N RNF2 n/a
8 TRCN0000226017 CGCATCAGGAAAGGGTCTTAG pLKO_005 472 CDS 100% 10.800 7.560 N Rnf2 n/a
9 TRCN0000040580 CCCAATTTGTTTGGATATGTT pLKO.1 260 CDS 100% 5.625 3.938 N Rnf2 n/a
10 TRCN0000040582 CCCAGTCGTGATGAGTATGAA pLKO.1 450 CDS 100% 5.625 3.938 N Rnf2 n/a
11 TRCN0000033698 GCTGTGAGGTTAGCTTTAGAA pLKO.1 897 CDS 100% 5.625 3.938 N RNF2 n/a
12 TRCN0000040579 CCCATCCAACTCTTATGGAAA pLKO.1 802 CDS 100% 4.950 3.465 N Rnf2 n/a
13 TRCN0000040581 CCATGACTACAAAGGAGTGTT pLKO.1 289 CDS 100% 4.950 2.970 N Rnf2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011277.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06867 pDONR223 100% 92% 99.4% None (many diffs) n/a
2 ccsbBroad304_06867 pLX_304 60.1% 92% 99.4% V5 (many diffs) n/a
3 TRCN0000472910 ACACATGAATCGTAACACCCCGGC pLX_317 50.6% 92% 99.4% V5 (many diffs) n/a
Download CSV