Transcript: Mouse NR_033304.2

Mus musculus LY6/PLAUR domain containing 6 (Lypd6), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Lypd6 (320343)
Length:
3660
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_033304.2
NBCI Gene record:
Lypd6 (320343)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_033304.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247131 TTGCTACCACATCACCTATAA pLKO_005 811 3UTR 100% 13.200 18.480 N Lypd6 n/a
2 TRCN0000184262 GTGTTTCAGTGATCGTGTCCT pLKO.1 856 3UTR 100% 2.640 3.696 N Lypd6 n/a
3 TRCN0000196125 GACATAATCTACCTCCACCCT pLKO.1 486 3UTR 100% 0.660 0.924 N Lypd6 n/a
4 TRCN0000247134 TCATCGCAGCCACCCATTAAT pLKO_005 1028 3UTR 100% 15.000 12.000 N Lypd6 n/a
5 TRCN0000247132 GTGGCTGGGACTCACCTTATA pLKO_005 887 3UTR 100% 13.200 9.240 N Lypd6 n/a
6 TRCN0000247135 TCCGTATCCTGGTGGGTTTAA pLKO_005 515 3UTR 100% 13.200 9.240 N Lypd6 n/a
7 TRCN0000247133 TGTGAAGGAAATATCTGTAAT pLKO_005 756 3UTR 100% 13.200 9.240 N Lypd6 n/a
8 TRCN0000184145 CACCAGATACTGCTACACTCA pLKO.1 611 3UTR 100% 2.640 1.848 N Lypd6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_033304.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04863 pDONR223 100% 12.5% None (many diffs) n/a
2 ccsbBroad304_04863 pLX_304 0% 12.5% V5 (many diffs) n/a
3 TRCN0000475987 TTGTATTCCTGCCTATCTCCGAGC pLX_317 53.7% 12.5% V5 (many diffs) n/a
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