Transcript: Mouse XM_006523356.2

PREDICTED: Mus musculus Fgfr1 oncogene partner (Fgfr1op), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fgfr1op (75296)
Length:
3125
CDS:
107..1243

Additional Resources:

NCBI RefSeq record:
XM_006523356.2
NBCI Gene record:
Fgfr1op (75296)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006523356.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251869 GTTAGACCATTACGGTTATAT pLKO_005 1733 3UTR 100% 15.000 21.000 N Fgfr1op n/a
2 TRCN0000184343 GACGGGAACACCAGTGATAAA pLKO.1 1148 CDS 100% 13.200 18.480 N Fgfr1op n/a
3 TRCN0000251865 GACGGGAACACCAGTGATAAA pLKO_005 1148 CDS 100% 13.200 18.480 N Fgfr1op n/a
4 TRCN0000251867 GCTAGTCTCGTCGCAGAATTT pLKO_005 329 CDS 100% 13.200 18.480 N Fgfr1op n/a
5 TRCN0000183354 GCGTCTGTAATGTTAAAGTAT pLKO.1 2186 3UTR 100% 5.625 7.875 N Fgfr1op n/a
6 TRCN0000251866 GAGACAAGAATTGCATCTTTC pLKO_005 710 CDS 100% 10.800 7.560 N Fgfr1op n/a
7 TRCN0000179295 GTGGAAGGAGATTCTTTCTTT pLKO.1 791 CDS 100% 5.625 3.938 N Fgfr1op n/a
8 TRCN0000251868 CTGTGGGTGGACCCTTATTAT pLKO_005 471 CDS 100% 15.000 9.000 N Fgfr1op n/a
9 TRCN0000294394 CTGTGGGTGGACCCTTATTAT pLKO_005 471 CDS 100% 15.000 9.000 N FGFR1OP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006523356.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07754 pDONR223 100% 85.4% 83.9% None (many diffs) n/a
2 ccsbBroad304_07754 pLX_304 0% 85.4% 83.9% V5 (many diffs) n/a
3 TRCN0000468162 CGAAATTGTCCAGAAATAATCTCC pLX_317 34.7% 85.4% 83.9% V5 (many diffs) n/a
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