Transcript: Human XM_011514770.1

PREDICTED: Homo sapiens copine 5 (CPNE5), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CPNE5 (57699)
Length:
2151
CDS:
197..2095

Additional Resources:

NCBI RefSeq record:
XM_011514770.1
NBCI Gene record:
CPNE5 (57699)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514770.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157659 GTCATCGACAACACGCTCAAT pLKO.1 281 CDS 100% 4.950 6.930 N CPNE5 n/a
2 TRCN0000151165 GTCATGAAGAACACCCTAAAT pLKO.1 791 CDS 100% 13.200 10.560 N CPNE5 n/a
3 TRCN0000150992 CAACATCTATGAGGTGGTAAA pLKO.1 976 CDS 100% 10.800 7.560 N CPNE5 n/a
4 TRCN0000151674 GCAAGTTCATTGTGGATTACT pLKO.1 315 CDS 100% 5.625 3.938 N CPNE5 n/a
5 TRCN0000151871 CCTGATTTATCCAAACACGAT pLKO.1 392 CDS 100% 2.640 1.848 N CPNE5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514770.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12396 pDONR223 100% 43.3% 38.5% None (many diffs) n/a
2 ccsbBroad304_12396 pLX_304 0% 43.3% 38.5% V5 (many diffs) n/a
3 TRCN0000470806 GGGTAGCATGCGGCTCGGCCTCGC pLX_317 51.7% 43.3% 38.5% V5 (many diffs) n/a
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