Transcript: Human XM_017005490.1

PREDICTED: Homo sapiens poly(ADP-ribose) polymerase family member 3 (PARP3), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PARP3 (10039)
Length:
2522
CDS:
539..2140

Additional Resources:

NCBI RefSeq record:
XM_017005490.1
NBCI Gene record:
PARP3 (10039)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005490.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230904 ACCCGCAGAGAAGCGCATAAT pLKO_005 655 CDS 100% 13.200 18.480 N PARP3 n/a
2 TRCN0000218494 CAAGTCAGCTGGATATGTTAT pLKO_005 1798 CDS 100% 13.200 18.480 N PARP3 n/a
3 TRCN0000052942 CCAGTCAAAGATCAACCACTT pLKO.1 862 CDS 100% 4.050 5.670 N PARP3 n/a
4 TRCN0000230907 GTACAAGATCCCTGAACTTAT pLKO_005 2275 3UTR 100% 13.200 9.240 N PARP3 n/a
5 TRCN0000230905 AGGTGATACAGACCTACTTAG pLKO_005 1548 CDS 100% 10.800 7.560 N PARP3 n/a
6 TRCN0000230906 CCCACTCCAAACTGGGTAATC pLKO_005 1653 CDS 100% 10.800 7.560 N PARP3 n/a
7 TRCN0000052940 CCAGACCAACATCGAGAACAA pLKO.1 751 CDS 100% 4.950 3.465 N PARP3 n/a
8 TRCN0000052938 CCCTGAACTTATGCCTCCTAA pLKO.1 2284 3UTR 100% 4.950 3.465 N PARP3 n/a
9 TRCN0000052941 GCACCATATCAACACGGACAA pLKO.1 1885 CDS 100% 4.050 2.835 N PARP3 n/a
10 TRCN0000052939 GCACCTGAGTACAAGGTGATA pLKO.1 1535 CDS 100% 0.495 0.347 N PARP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005490.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07535 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_07535 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470245 CTTCCATTAAACTTTTAGGTTCAA pLX_317 29.4% 100% 100% V5 n/a
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