Transcript: Human XM_017021264.1

PREDICTED: Homo sapiens inositol-tetrakisphosphate 1-kinase (ITPK1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ITPK1 (3705)
Length:
3052
CDS:
390..1244

Additional Resources:

NCBI RefSeq record:
XM_017021264.1
NBCI Gene record:
ITPK1 (3705)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021264.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000037695 CGAGATGGCTATCGTGTTCAA pLKO.1 500 CDS 100% 4.950 6.930 N ITPK1 n/a
2 TRCN0000333583 CGAGATGGCTATCGTGTTCAA pLKO_005 500 CDS 100% 4.950 6.930 N ITPK1 n/a
3 TRCN0000199474 GCACCAACTCTCACGAGATGG pLKO.1 487 CDS 100% 1.350 1.890 N ITPK1 n/a
4 TRCN0000344876 GCACCAACTCTCACGAGATGG pLKO_005 487 CDS 100% 1.350 1.890 N ITPK1 n/a
5 TRCN0000219828 CCCAACACACGTCCCATTTAG pLKO.1 1909 3UTR 100% 13.200 9.240 N ITPK1 n/a
6 TRCN0000219827 CTCTGATGTCATGATCTAAAT pLKO.1 1379 3UTR 100% 13.200 9.240 N ITPK1 n/a
7 TRCN0000037696 CACGCCGTCATTGACATCAAT pLKO.1 870 CDS 100% 5.625 3.938 N ITPK1 n/a
8 TRCN0000037694 CGGCTTGACTTTCCCATTCAT pLKO.1 443 CDS 100% 5.625 3.938 N ITPK1 n/a
9 TRCN0000333659 CGGCTTGACTTTCCCATTCAT pLKO_005 443 CDS 100% 5.625 3.938 N ITPK1 n/a
10 TRCN0000199145 CCCTGCGTGGTCCAGAATTTC pLKO.1 549 CDS 100% 4.400 3.080 N ITPK1 n/a
11 TRCN0000194788 CAGAATTTCATCAACCACAAC pLKO.1 561 CDS 100% 4.050 2.835 N ITPK1 n/a
12 TRCN0000037697 CATCTTCTTCAACAGCCACAA pLKO.1 680 CDS 100% 4.050 2.835 N ITPK1 n/a
13 TRCN0000333660 CATCTTCTTCAACAGCCACAA pLKO_005 680 CDS 100% 4.050 2.835 N ITPK1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021264.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488040 TTCCGTGCTCTCTAGCCAAACACT pLX_317 16.4% 68.5% 68.5% V5 (not translated due to prior stop codon) 0_1ins390;486C>T n/a
2 ccsbBroadEn_00888 pDONR223 100% 42.7% 41.6% None (many diffs) n/a
3 ccsbBroad304_00888 pLX_304 0% 42.7% 41.6% V5 (many diffs) n/a
4 TRCN0000469387 GCCCATGACCTAGTATACAAAAAA pLX_317 41.5% 42.7% 41.6% V5 (many diffs) n/a
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