Transcript: Mouse XM_017314333.1

PREDICTED: Mus musculus myosin XV (Myo15), transcript variant X16, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Myo15 (17910)
Length:
12960
CDS:
1710..12191

Additional Resources:

NCBI RefSeq record:
XM_017314333.1
NBCI Gene record:
Myo15 (17910)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314333.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000421993 CATAAGTGTCTTTAAGCTAAT pLKO_005 7862 CDS 100% 10.800 15.120 N Myo15 n/a
2 TRCN0000417456 TGATGGCACAGTTACGCTATT pLKO_005 7096 CDS 100% 10.800 15.120 N Myo15 n/a
3 TRCN0000089564 CCGAGCACAATGCTCGAATTT pLKO.1 10623 CDS 100% 1.320 1.848 N Myo15 n/a
4 TRCN0000089565 GCCAACCTAAAGACCAGATTT pLKO.1 5379 CDS 100% 13.200 10.560 N Myo15 n/a
5 TRCN0000412756 ACCTCATCTATACCTATATTG pLKO_005 5407 CDS 100% 13.200 9.240 N Myo15 n/a
6 TRCN0000089566 CCTGTTCAACAAGATCGTCTT pLKO.1 6503 CDS 100% 4.050 2.835 N Myo15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314333.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.