Annotation Summary for Cell Line: 42-MG-BA  

Cell line primary name: 42-MG-BA
Cell line aliases:
Gender: M
Site Primary: central_nervous_system
Histology: glioma
Hist Subtype1: astrocytoma_Grade_IV
Notes:
Source: DSMZ
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_B02_296016
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_E05_293384
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in 42-MG-BA

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ACACA 17 35766564 35766564 42MGBA_CENTRAL_... 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ACOXL 2 111851141 111851141 42MGBA_CENTRAL_... 37 Intron SNP C T uc010yxk.1 ACOXL_uc010fkc.... Hybrid_Cap... view
ADAM17 2 9630245 9630245 42MGBA_CENTRAL_... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 42MGBA_CENTRAL_... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 42MGBA_CENTRAL_... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 4 113347609 113347610 42MGBA_CENTRAL_... 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 42MGBA_CENTRAL_... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ARHGEF7 p.E218D 13 111870148 111870148 42MGBA_CENTRAL_... 37 Missense_Mutation SNP G C uc001vrs.2 ARHGEF7_uc001vr... Hybrid_Cap... view
AXIN1 16 337830 337830 42MGBA_CENTRAL_... 37 3'UTR SNP G C uc002cgp.1 AXIN1_uc002cgq.... Hybrid_Cap... view
BCR 22 23631813 23631814 42MGBA_CENTRAL_... 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 42MGBA_CENTRAL_... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BMP4 14 54416601 54416602 42MGBA_CENTRAL_... 37 3'UTR Ins - AT rs74495140;rs76335800 uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap...
BRDT p.K843E 1 92470097 92470097 42MGBA_CENTRAL_... 37 Missense_Mutation SNP A G uc010osz.1 BRDT_uc001dok.3... Hybrid_Cap... view
BRIP1 p.R999* 17 59761412 59761412 42MGBA_CENTRAL_... 37 Nonsense_Mutation SNP T A uc002izk.1 Hybrid_Cap... view
C17ORF37 17 37885640 37885641 42MGBA_CENTRAL_... 37 3'UTR Ins - G rs75811535 uc002hsq.2 Hybrid_Cap...
CHIC2 4 54876194 54876194 42MGBA_CENTRAL_... 37 3'UTR SNP G A uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 42MGBA_CENTRAL_... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 42MGBA_CENTRAL_... 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
DAXX p.R717W 6 33286824 33286824 42MGBA_CENTRAL_... 37 Missense_Mutation SNP G A uc011dre.1 ZBTB22_uc003oeb... Hybrid_Cap... view
DCLK1 13 36348638 36348638 42MGBA_CENTRAL_... 37 3'UTR SNP G A uc001uvf.2 DCLK1_uc001uve.... Hybrid_Cap... view
DLC1 8 13072174 13072174 42MGBA_CENTRAL_... 37 Intron SNP C G uc003wwm.2 DLC1_uc003wwl.1... Hybrid_Cap... view
DNAH8 6 38952247 38952250 42MGBA_CENTRAL_... 37 Intron Del CACA - uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
EDN1 6 12290729 12290729 42MGBA_CENTRAL_... 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EPHA6 3 97367230 97367231 42MGBA_CENTRAL_... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ESR2 14 64701554 64701554 42MGBA_CENTRAL_... 37 Intron SNP C A uc001xha.1 ESR2_uc001xgu.2... Hybrid_Cap... view
ETV1 7 14028708 14028708 42MGBA_CENTRAL_... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR3 4 1809128 1809129 42MGBA_CENTRAL_... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 42MGBA_CENTRAL_... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 42MGBA_CENTRAL_... 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FN1 2 216244182 216244185 42MGBA_CENTRAL_... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GRIA3 X 122318386 122318387 42MGBA_CENTRAL_... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GTSE1 22 46722679 46722679 42MGBA_CENTRAL_... 37 Intron Del T - uc011aqy.1 GTSE1_uc011aqz.... Hybrid_Cap...
HDAC6 X 48661092 48661092 42MGBA_CENTRAL_... 37 5'UTR SNP C A uc011mmi.1 HDAC6_uc004dkr.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 42MGBA_CENTRAL_... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 42MGBA_CENTRAL_... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IL21R 16 27460779 27460780 42MGBA_CENTRAL_... 37 3'UTR Ins - TG rs66690088 uc002doq.1 IL21R_uc002dor.... Hybrid_Cap...
ILK 11 6630029 6630029 42MGBA_CENTRAL_... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 42MGBA_CENTRAL_... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 42MGBA_CENTRAL_... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LIFR p.V910F 5 38482263 38482263 42MGBA_CENTRAL_... 37 Missense_Mutation SNP C A uc010ive.1 LIFR_uc003jli.2... Hybrid_Cap... view
MAF 16 79628537 79628537 42MGBA_CENTRAL_... 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 42MGBA_CENTRAL_... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 42MGBA_CENTRAL_... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 42MGBA_CENTRAL_... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K5 p.988_989insD 6 136913666 136913667 42MGBA_CENTRAL_... 37 In_Frame_Ins Ins - GTC uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 42MGBA_CENTRAL_... 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MAST3 p.E287_splice 19 18235444 18235451 42MGBA_CENTRAL_... 37 Splice_Site_Del Del GCCCC... - uc002nhz.3 Hybrid_Cap...
MCM3APAS 21 47671275 47671276 42MGBA_CENTRAL_... 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MYO3B p.L287V 2 171225775 171225775 42MGBA_CENTRAL_... 37 Missense_Mutation SNP C G uc002ufy.2 MYO3B_uc002ufv.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 42MGBA_CENTRAL_... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 42MGBA_CENTRAL_... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 42MGBA_CENTRAL_... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK9 14 75572824 75572824 42MGBA_CENTRAL_... 37 Intron SNP C T uc001xrl.2 NEK9_uc001xrk.2... Hybrid_Cap... view
NFIA 1 61921185 61921186 42MGBA_CENTRAL_... 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH4 p.15_16LL>L 6 32191659 32191661 42MGBA_CENTRAL_... 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 42MGBA_CENTRAL_... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223066017 223066018 42MGBA_CENTRAL_... 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 42MGBA_CENTRAL_... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PGR 11 100933598 100933599 42MGBA_CENTRAL_... 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PICALM 11 85779921 85779921 42MGBA_CENTRAL_... 37 5'UTR SNP C A uc001pbm.2 PICALM_uc001pbl... Hybrid_Cap... view
PMS1 p.N57fs 2 190660531 190660535 42MGBA_CENTRAL_... 37 Frame_Shift_Del Del AACGG - uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PMS1 2 190670539 190670540 42MGBA_CENTRAL_... 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 42MGBA_CENTRAL_... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTEN p.R55fs 10 89653865 89653866 42MGBA_CENTRAL_... 37 Frame_Shift_Ins Ins - G uc001kfb.2 Hybrid_Cap...
RASGRF1 15 79277150 79277151 42MGBA_CENTRAL_... 37 Intron Ins - C rs67045840;rs77640668 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap...
RB1 p.K341fs 13 48941711 48941712 42MGBA_CENTRAL_... 37 Frame_Shift_Del Del AA - uc001vcb.2 RB1_uc010act.1_... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 42MGBA_CENTRAL_... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RHPN2 p.G99G 19 33517427 33517427 42MGBA_CENTRAL_... 37 Silent SNP G A uc002nuf.2 RHPN2_uc010xro.... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 42MGBA_CENTRAL_... 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 42MGBA_CENTRAL_... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SACS p.R2383H 13 23910867 23910867 42MGBA_CENTRAL_... 37 Missense_Mutation SNP C T uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
STK25 2 242435659 242435662 42MGBA_CENTRAL_... 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 42MGBA_CENTRAL_... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TLE1 9 84202837 84202838 42MGBA_CENTRAL_... 37 Intron Ins - TGTCATCCCGCC rs5898748 uc004alz.2 TLE1_uc004aly.2... Hybrid_Cap...
TMEM123 11 102269398 102269398 42MGBA_CENTRAL_... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 42MGBA_CENTRAL_... 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP53 p.R282Q 17 7577093 7577093 42MGBA_CENTRAL_... 37 Missense_Mutation SNP C T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP53 p.T211I 17 7578217 7578217 42MGBA_CENTRAL_... 37 Missense_Mutation SNP G A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 42MGBA_CENTRAL_... 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRIM37 17 57183842 57183848 42MGBA_CENTRAL_... 37 5'UTR Del GGCCG... - uc002iwy.3 TRIM37_uc002iwz... Hybrid_Cap...
TTN p.A3602T 2 179600637 179600637 42MGBA_CENTRAL_... 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 42MGBA_CENTRAL_... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZMYND10 3 50378785 50378785 42MGBA_CENTRAL_... 37 3'UTR SNP T G uc003dag.1 RASSF1_uc003dad... Hybrid_Cap... view