Annotation Summary for Cell Line: 769-P  

Cell line primary name: 769-P
Cell line aliases:
Gender: F
Site Primary: kidney
Histology: carcinoma
Hist Subtype1: clear_cell_renal_cell_carcinoma
Notes:
Source: ATCC
Expression arrays: METIS_p_NCLE_RNA1_Human_U133_Plus_2.0_A05_240858
SNP arrays: MISTS_p_NCLE_DNAAffy11_GenomeWideSNP_6_D06_578342
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in 769-P

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ABCA3 p.P483R 16 2353989 2353989 769P_KIDNEY 37 Missense_Mutation SNP G C uc002cpy.1 ABCA3_uc010bsk.... Hybrid_Cap... view
ACACA p.S1253I 17 35564664 35564664 769P_KIDNEY 37 Missense_Mutation SNP C A uc002hno.2 ACACA_uc002hnk.... Hybrid_Cap... view
ACACA 17 35766564 35766564 769P_KIDNEY 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM17 2 9630245 9630245 769P_KIDNEY 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 769P_KIDNEY 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 769P_KIDNEY 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 769P_KIDNEY 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 769P_KIDNEY 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
BAP1 p.Y33D 3 52443595 52443595 769P_KIDNEY 37 Missense_Mutation SNP A C uc003ddx.2 PHF7_uc003ddy.2... Hybrid_Cap... view
BCR 22 23631813 23631814 769P_KIDNEY 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CABC1 1 227171736 227171737 769P_KIDNEY 37 Intron Ins - T rs1574184 uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CCNT1 p.V634I 12 49087097 49087097 769P_KIDNEY 37 Missense_Mutation SNP C T uc001rse.1 LOC144438_uc001... Hybrid_Cap... view
CDK11B 1 1654066 1654068 769P_KIDNEY 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD8 14 21853630 21853630 769P_KIDNEY 37 3'UTR Del T - rs78520772 uc001was.1 CHD8_uc001war.1... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 769P_KIDNEY 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
COL1A1 p.V349F 17 48273295 48273295 769P_KIDNEY 37 Missense_Mutation SNP C A rs72645362 uc002iqm.2 Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 769P_KIDNEY 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSMD3 p.R3127L 8 113293531 113293531 769P_KIDNEY 37 Missense_Mutation SNP C A uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CSNK1A1L p.S237R 13 37678683 37678683 769P_KIDNEY 37 Missense_Mutation SNP A C uc001uwm.1 Hybrid_Cap... view
CSNK1A1L p.F154L 13 37678932 37678932 769P_KIDNEY 37 Missense_Mutation SNP G T uc001uwm.1 Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 769P_KIDNEY 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CXCL12 10 44873992 44873993 769P_KIDNEY 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DDX10 p.G578A 11 108593957 108593957 769P_KIDNEY 37 Missense_Mutation SNP G C uc001pkm.2 DDX10_uc001pkl.... Hybrid_Cap... view
DYRK1A 21 38884966 38884967 769P_KIDNEY 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EIF4E 4 99808137 99808141 769P_KIDNEY 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EP300 22 41574970 41574972 769P_KIDNEY 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
ERC1 p.N941I 12 1481040 1481040 769P_KIDNEY 37 Missense_Mutation SNP A T uc001qjb.2 ERC1_uc001qiz.2... Hybrid_Cap... view
ERCC2 19 45854768 45854768 769P_KIDNEY 37 3'UTR Del G - uc002pbj.2 KLC3_uc002pbf.1... Hybrid_Cap...
ETV1 7 14028708 14028708 769P_KIDNEY 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
EXT1 8 118811807 118811807 769P_KIDNEY 37 3'UTR Del T - uc003yok.1 Hybrid_Cap...
FANCM p.R1354fs 14 45646019 45646019 769P_KIDNEY 37 Frame_Shift_Del Del A - uc001wwd.3 FANCM_uc010anf.... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 769P_KIDNEY 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FOXP1 3 71008341 71008342 769P_KIDNEY 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GMPS 3 155588592 155588592 769P_KIDNEY 37 5'UTR SNP C T uc003faq.2 GMPS_uc011bom.1... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 769P_KIDNEY 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 769P_KIDNEY 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 769P_KIDNEY 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
ILK 11 6630029 6630029 769P_KIDNEY 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB1 10 33197131 33197134 769P_KIDNEY 37 Intron Del CTTT - rs116966876 uc001iwq.3 ITGB1_uc001iwp.... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 769P_KIDNEY 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
JARID2 p.E102K 6 15410577 15410577 769P_KIDNEY 37 Missense_Mutation SNP G A uc003nbj.2 JARID2_uc011diu... Hybrid_Cap... view
KLK7 19 51480672 51480675 769P_KIDNEY 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 769P_KIDNEY 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 769P_KIDNEY 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 769P_KIDNEY 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPK8 p.P406P 10 49643006 49643006 769P_KIDNEY 37 Silent SNP G A uc009xnz.2 MAPK8_uc001jgl.... Hybrid_Cap... view
MCM3APAS 21 47671275 47671276 769P_KIDNEY 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 769P_KIDNEY 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MTMR11 1 149902645 149902645 769P_KIDNEY 37 Intron SNP T C uc001etl.3 SF3B4_uc001etj.... Hybrid_Cap... view
MYST4 p.E1104del 10 76781906 76781908 769P_KIDNEY 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 769P_KIDNEY 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 769P_KIDNEY 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 769P_KIDNEY 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFATC1 18 77287653 77287654 769P_KIDNEY 37 3'UTR Del AA - uc010xfg.1 NFATC1_uc002lnd... Hybrid_Cap...
NPR1 1 153665919 153665920 769P_KIDNEY 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 769P_KIDNEY 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUMA1 p.YEGAK1512del 11 71724001 71724015 769P_KIDNEY 37 In_Frame_Del Del CTTGG... - uc001orl.1 NUMA1_uc009ysw.... Hybrid_Cap...
PAX3 2 223158653 223158653 769P_KIDNEY 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PCM1 8 17813218 17813218 769P_KIDNEY 37 Intron Del T - uc003wyi.3 PCM1_uc011kyh.1... Hybrid_Cap...
PDGFRA 4 55130162 55130162 769P_KIDNEY 37 Intron Del T - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PDK4 7 95221928 95221928 769P_KIDNEY 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 769P_KIDNEY 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAD50 p.Q799H 5 131939181 131939181 769P_KIDNEY 37 Missense_Mutation SNP G C rs61749630 uc003kxi.2 RAD50_uc003kxh.... Hybrid_Cap... view
RAPGEF2 4 160189200 160189201 769P_KIDNEY 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 769P_KIDNEY 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RIOK2 5 96498721 96498721 769P_KIDNEY 37 3'UTR SNP T A uc003kmz.2 Hybrid_Cap... view
ROBO2 3 77666937 77666937 769P_KIDNEY 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 769P_KIDNEY 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SACS p.T3759M 13 23906739 23906739 769P_KIDNEY 37 Missense_Mutation SNP G A uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
TAF1 p.E1120A X 70613988 70613988 769P_KIDNEY 37 Missense_Mutation SNP A C uc004dzt.3 BCYRN1_uc011mpt... Hybrid_Cap... view
TEC 4 48139307 48139310 769P_KIDNEY 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TLK1 2 171850178 171850179 769P_KIDNEY 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 769P_KIDNEY 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TTBK1 p.E771del 6 43250726 43250728 769P_KIDNEY 37 In_Frame_Del Del GAA - uc003ouq.1 Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 769P_KIDNEY 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VHL p.I180N 3 10191546 10191546 769P_KIDNEY 37 Missense_Mutation SNP T A uc003bvc.2 VHL_uc003bvd.2_... Hybrid_Cap... view