Annotation Summary for Cell Line: BEN  

Cell line primary name: BEN
Cell line aliases:
Gender: M
Site Primary: lung
Histology: carcinoma
Hist Subtype1: NS
Notes:
Source: DSMZ
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_C02_474694
SNP arrays: CHARY_p_NCLE_DNAAffy9_GenomeWideSNP_6_E06_490352
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in BEN

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 BEN_LUNG 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM32 p.L59fs 8 38994213 38994214 BEN_LUNG 37 Frame_Shift_Del Del TG - uc003xmt.3 ADAM32_uc011lch... Hybrid_Cap...
ADAM32 p.I521M 8 39089583 39089583 BEN_LUNG 37 Missense_Mutation SNP A G uc003xmt.3 ADAM32_uc011lch... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 BEN_LUNG 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 4 113347609 113347610 BEN_LUNG 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK3 p.E1682K 15 85406810 85406810 BEN_LUNG 37 Missense_Mutation SNP G A uc002ble.2 ALPK3_uc010upc.... Hybrid_Cap... view
ARHGEF7 13 111935396 111935396 BEN_LUNG 37 Intron SNP A G uc001vrs.2 ARHGEF7_uc001vr... Hybrid_Cap... view
ASTN1 p.I1156R 1 176838160 176838160 BEN_LUNG 37 Missense_Mutation SNP A C uc001glc.2 ASTN1_uc001glb.... Hybrid_Cap... view
BCR 22 23631813 23631814 BEN_LUNG 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BIRC2 p.S361* 11 102234406 102234406 BEN_LUNG 37 Nonsense_Mutation SNP C G uc001pgy.2 BIRC2_uc010ruq.... Hybrid_Cap... view
BRDT p.S773* 1 92467624 92467624 BEN_LUNG 37 Nonsense_Mutation SNP C G uc010osz.1 BRDT_uc001dok.3... Hybrid_Cap... view
CACNB2 10 18828721 18828722 BEN_LUNG 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CDC7 p.S299L 1 91979578 91979578 BEN_LUNG 37 Missense_Mutation SNP C T uc001doe.2 CDC7_uc001dof.2... Hybrid_Cap... view
CDKL1 p.P826L 14 50807944 50807944 BEN_LUNG 37 Missense_Mutation SNP G A uc010anu.1 CDKL1_uc001wxz.... Hybrid_Cap... view
CEP110 p.E420Q 9 123875915 123875915 BEN_LUNG 37 Missense_Mutation SNP G C uc004bkx.1 CEP110_uc004bkw... Hybrid_Cap... view
CHD8 14 21853630 21853630 BEN_LUNG 37 3'UTR Del T - rs78520772 uc001was.1 CHD8_uc001war.1... Hybrid_Cap...
CLP1 p.E216K 11 57428276 57428276 BEN_LUNG 37 Missense_Mutation SNP G A uc001nkw.2 CLP1_uc010rjw.1... Hybrid_Cap... view
CLPTM1L p.F337L 5 1330466 1330466 BEN_LUNG 37 Missense_Mutation SNP A G uc003jch.2 CLPTM1L_uc003jc... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 BEN_LUNG 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 BEN_LUNG 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
CSNK2A1 p.Q290H 20 468174 468174 BEN_LUNG 37 Missense_Mutation SNP C A uc002wdw.1 CSNK2A1_uc002wd... Hybrid_Cap... view
CTSL2 p.H36H 9 99800218 99800218 BEN_LUNG 37 Silent SNP G A uc004awt.2 CTSL2_uc010msi.... Hybrid_Cap... view
CXCL12 10 44873914 44873914 BEN_LUNG 37 Intron SNP A G rs74729808 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap... view
CYFIP1 p.R1085C 15 22999381 22999381 BEN_LUNG 37 Missense_Mutation SNP C T uc001yus.2 CYFIP1_uc001yut... Hybrid_Cap... view
CYP1A2 15 75047469 75047470 BEN_LUNG 37 3'UTR Ins - C uc002ayr.1 Hybrid_Cap...
EPHA6 3 97367230 97367231 BEN_LUNG 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 BEN_LUNG 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 BEN_LUNG 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 BEN_LUNG 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
GPC3 X 132888208 132888208 BEN_LUNG 37 Intron Del A - uc010nrn.1 GPC3_uc004exd.1... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 BEN_LUNG 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 BEN_LUNG 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 BEN_LUNG 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HDLBP p.G841S 2 242179106 242179106 BEN_LUNG 37 Missense_Mutation SNP C T uc002waz.2 HDLBP_uc002wba.... Hybrid_Cap... view
HIPK1 p.N149S 1 114483451 114483451 BEN_LUNG 37 Missense_Mutation SNP A G uc001eem.2 HIPK1_uc001eel.... Hybrid_Cap... view
ILK 11 6630029 6630029 BEN_LUNG 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INHBA 7 41729122 41729122 BEN_LUNG 37 3'UTR Del T - uc003thq.2 INHBA_uc003thr.... Hybrid_Cap...
ISG15 p.V148M 1 949802 949802 BEN_LUNG 37 Missense_Mutation SNP G A uc001acj.3 Hybrid_Cap... view
ITGA5 p.L474M 12 54798257 54798257 BEN_LUNG 37 Missense_Mutation SNP G T uc001sga.2 Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 BEN_LUNG 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
JAG1 p.Q1165H 20 10620308 10620308 BEN_LUNG 37 Missense_Mutation SNP C A uc002wnw.2 Hybrid_Cap... view
LATS2 p.L625V 13 21562046 21562046 BEN_LUNG 37 Missense_Mutation SNP G C uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap... view
LRP1B p.N4017S 2 141093250 141093250 BEN_LUNG 37 Missense_Mutation SNP T C uc002tvj.1 Hybrid_Cap... view
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 BEN_LUNG 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 BEN_LUNG 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 BEN_LUNG 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K13 p.Q725E 3 185191292 185191292 BEN_LUNG 37 Missense_Mutation SNP C G uc010hyf.2 MAP3K13_uc011br... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 BEN_LUNG 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MARK4 p.S203N 19 45774788 45774788 BEN_LUNG 37 Missense_Mutation SNP G A uc002pba.1 MARK4_uc002paz.... Hybrid_Cap... view
MECOM p.R83* 3 169099103 169099103 BEN_LUNG 37 Nonsense_Mutation SNP G A uc011bpj.1 MECOM_uc003ffl.... Hybrid_Cap... view
MSH3 p.PPA66del 5 79950742 79950750 BEN_LUNG 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MTCP1 X 154292354 154292354 BEN_LUNG 37 3'UTR SNP C G uc004fmz.2 MTCP1NB_uc004fm... Hybrid_Cap... view
MYO3A p.L1513I 10 26482232 26482232 BEN_LUNG 37 Missense_Mutation SNP C A uc001isn.2 MYO3A_uc009xkp.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 BEN_LUNG 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 BEN_LUNG 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.QQ1275del 20 46279861 46279866 BEN_LUNG 37 In_Frame_Del Del CAGCA... - rs11472494;rs67218125;rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 BEN_LUNG 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NF2 p.N248S 22 30057261 30057261 BEN_LUNG 37 Missense_Mutation SNP A G uc003age.3 NF2_uc003afy.3_... Hybrid_Cap... view
NOTCH4 p.P985L 6 32172078 32172078 BEN_LUNG 37 Missense_Mutation SNP G A uc003obb.2 NOTCH4_uc003oba... Hybrid_Cap... view
NOTCH4 p.15_16LL>L 6 32191659 32191661 BEN_LUNG 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NOV p.G86S 8 120429155 120429155 BEN_LUNG 37 Missense_Mutation SNP G A uc003yoq.2 Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881820 50881821 BEN_LUNG 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 BEN_LUNG 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP210 3 13393363 13393363 BEN_LUNG 37 Intron SNP G A uc003bxv.1 NUP210_uc003bxw... Hybrid_Cap... view
NUP210 p.Q473* 3 13417018 13417018 BEN_LUNG 37 Nonsense_Mutation SNP G A uc003bxv.1 NUP210_uc003bxx... Hybrid_Cap... view
PAPPA p.E715K 9 118989741 118989741 BEN_LUNG 37 Missense_Mutation SNP G A uc004bjn.2 PAPPA_uc011lxp.... Hybrid_Cap... view
PDE4DIP p.S2089del 1 144859817 144859819 BEN_LUNG 37 In_Frame_Del Del GGA - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDGFRA 4 55130162 55130162 BEN_LUNG 37 Intron Del T - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 BEN_LUNG 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CA p.G967R 3 178948127 178948127 BEN_LUNG 37 Missense_Mutation SNP G A uc003fjk.2 Hybrid_Cap... view
PPAPDC1B 8 38126572 38126572 BEN_LUNG 37 Intron SNP G A uc003xlf.3 PPAPDC1B_uc003x... Hybrid_Cap... view
PTPN1 p.S285C 20 49195856 49195856 BEN_LUNG 37 Missense_Mutation SNP C G uc002xvl.2 PTPN1_uc010zys.... Hybrid_Cap... view
RCBTB2 p.T228M 13 49086159 49086159 BEN_LUNG 37 Missense_Mutation SNP G A uc010tgg.1 RCBTB2_uc001vch... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 BEN_LUNG 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KA6 p.D8D X 83442884 83442884 BEN_LUNG 37 Silent SNP G A uc004eej.1 RPS6KA6_uc011mq... Hybrid_Cap... view
SGK2 p.A320V 20 42204949 42204949 BEN_LUNG 37 Missense_Mutation SNP C T uc002xkv.2 SGK2_uc002xkt.2... Hybrid_Cap... view
SLC14A1 p.S123Y 18 43311028 43311028 BEN_LUNG 37 Missense_Mutation SNP C A uc010dnk.2 SLC14A1_uc010xc... Hybrid_Cap... view
SLC45A3 1 205633844 205633844 BEN_LUNG 37 5'UTR SNP C T uc001hda.1 SLC45A3_uc010pr... Hybrid_Cap... view
SP140 p.P62S 2 231101922 231101922 BEN_LUNG 37 Missense_Mutation SNP C T uc002vql.2 SP140_uc010zma.... Hybrid_Cap... view
SRC p.V380M 20 36030859 36030859 BEN_LUNG 37 Missense_Mutation SNP G A uc002xgx.2 SRC_uc002xgy.2_... Hybrid_Cap... view
STK31 7 23872024 23872025 BEN_LUNG 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
SULF2 p.R263L 20 46313275 46313275 BEN_LUNG 37 Missense_Mutation SNP C A uc002xto.2 SULF2_uc002xtr.... Hybrid_Cap... view
TCL6 p.H69P 14 96135902 96135902 BEN_LUNG 37 Missense_Mutation SNP A C uc001yeq.2 TCL6_uc001yep.1... Hybrid_Cap... view
TNFRSF4 p.T25T 1 1149433 1149433 BEN_LUNG 37 Silent SNP G A uc001ade.2 TNFRSF4_uc001ad... Hybrid_Cap... view
TP53 p.Y163C 17 7578442 7578442 BEN_LUNG 37 Missense_Mutation SNP T C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM42 p.C625R 3 140409822 140409822 BEN_LUNG 37 Missense_Mutation SNP T C uc003eto.1 Hybrid_Cap... view
TRPM7 15 50978759 50978759 BEN_LUNG 37 5'UTR SNP C A uc001zyt.3 TRPM7_uc010bew.... Hybrid_Cap... view
TRPS1 p.Y856F 8 116599361 116599361 BEN_LUNG 37 Missense_Mutation SNP T A uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap... view
TTN 2 179616641 179616641 BEN_LUNG 37 Intron SNP T C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 BEN_LUNG 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VPS13B p.G2575R 8 100791128 100791128 BEN_LUNG 37 Missense_Mutation SNP G C uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view
VRK3 p.S55N 19 50512618 50512618 BEN_LUNG 37 Missense_Mutation SNP C T uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap... view
WRN p.S394W 8 30938724 30938724 BEN_LUNG 37 Missense_Mutation SNP C G uc003xio.3 WRN_uc011lbd.1_... Hybrid_Cap... view
ZAK p.S155F 2 174055787 174055787 BEN_LUNG 37 Missense_Mutation SNP C T uc002uhz.2 ZAK_uc002uhx.2_... Hybrid_Cap... view
ZNF521 p.Q998* 18 22804890 22804890 BEN_LUNG 37 Nonsense_Mutation SNP G A uc002kvk.2 ZNF521_uc010xbe... Hybrid_Cap... view
ZNF521 p.R602W 18 22806078 22806078 BEN_LUNG 37 Missense_Mutation SNP T A uc002kvk.2 ZNF521_uc010xbe... Hybrid_Cap... view