Annotation Summary for Cell Line: Becker  

Cell line primary name: Becker
Cell line aliases:
Gender: M
Site Primary: central_nervous_system
Histology: glioma
Hist Subtype1: astrocytoma_Grade_IV
Notes:
Source: HSRRB
Expression arrays: AGENT_p_NCLE_RNA6_HG-U133_Plus_2_G05_436498
SNP arrays: PODIA_p_NCLE_DNAAffy7_GenomeWideSNP_6_D02_437524
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in Becker

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 BECKER_CENTRAL_... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 BECKER_CENTRAL_... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 BECKER_CENTRAL_... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 BECKER_CENTRAL_... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 BECKER_CENTRAL_... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALS2 2 202587706 202587707 BECKER_CENTRAL_... 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
ALS2 p.G1107R 2 202590107 202590107 BECKER_CENTRAL_... 37 Missense_Mutation SNP C T uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap... view
AURKC 19 57742494 57742507 BECKER_CENTRAL_... 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BAI3 p.A340S 6 69646560 69646560 BECKER_CENTRAL_... 37 Missense_Mutation SNP G T uc003pev.3 BAI3_uc010kak.2... Hybrid_Cap... view
BCR 22 23632777 23632778 BECKER_CENTRAL_... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BIK p.E67K 22 43523740 43523740 BECKER_CENTRAL_... 37 Missense_Mutation SNP G A uc003bdk.2 Hybrid_Cap... view
BMP2K 4 79793578 79793578 BECKER_CENTRAL_... 37 Intron SNP C A uc003hlk.2 BMP2K_uc003hlj.... Hybrid_Cap... view
BTG1 12 92537706 92537707 BECKER_CENTRAL_... 37 3'UTR Ins - T rs33983967 uc001tby.3 BTG1_uc001tbv.1... Hybrid_Cap...
BTRC p.V552_splice 10 103298129 103298129 BECKER_CENTRAL_... 37 Splice_Site_SNP SNP G T uc001kta.2 BTRC_uc001ktb.2... Hybrid_Cap... view
CABC1 1 227171585 227171585 BECKER_CENTRAL_... 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CACNB2 10 18828721 18828722 BECKER_CENTRAL_... 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CAD p.V1596M 2 27460981 27460981 BECKER_CENTRAL_... 37 Missense_Mutation SNP G A uc002rji.2 CAD_uc010eyw.2_... Hybrid_Cap... view
CD40LG X 135741637 135741637 BECKER_CENTRAL_... 37 3'UTR SNP G A uc004faa.2 CD40LG_uc010nsd... Hybrid_Cap... view
CDK11B p.K127_splice 1 1647893 1647894 BECKER_CENTRAL_... 37 Splice_Site_Ins Ins - TTTCTT rs114930018 uc001agv.1 CDK11B_uc001ags... Hybrid_Cap...
CDK18 1 205495890 205495891 BECKER_CENTRAL_... 37 Intron Del CT - uc001hcr.2 CDK18_uc010pri.... Hybrid_Cap...
CHIC2 4 54876132 54876132 BECKER_CENTRAL_... 37 3'UTR Del C - rs4437313 uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 BECKER_CENTRAL_... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CSMD3 p.Q1369H 8 113569119 113569119 BECKER_CENTRAL_... 37 Missense_Mutation SNP T G uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CSMD3 p.E1330* 8 113585784 113585784 BECKER_CENTRAL_... 37 Nonsense_Mutation SNP C A uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CYLD 16 50830558 50830558 BECKER_CENTRAL_... 37 3'UTR SNP G A uc002egp.1 CYLD_uc002egq.1... Hybrid_Cap... view
DACH1 13 72014625 72014626 BECKER_CENTRAL_... 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DFNA5 7 24783982 24783982 BECKER_CENTRAL_... 37 Intron Del C - uc010kus.1 DFNA5_uc003swz.... Hybrid_Cap...
EIF4E 4 99808137 99808141 BECKER_CENTRAL_... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EP300 22 41574970 41574972 BECKER_CENTRAL_... 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA6 3 97367230 97367231 BECKER_CENTRAL_... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 BECKER_CENTRAL_... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 BECKER_CENTRAL_... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 BECKER_CENTRAL_... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 BECKER_CENTRAL_... 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FN1 2 216244182 216244185 BECKER_CENTRAL_... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 BECKER_CENTRAL_... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 BECKER_CENTRAL_... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HDAC6 p.P748T X 48678567 48678567 BECKER_CENTRAL_... 37 Missense_Mutation SNP C A uc011mmi.1 HDAC6_uc004dks.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 BECKER_CENTRAL_... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90B1 p.E791del 12 104341188 104341190 BECKER_CENTRAL_... 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 BECKER_CENTRAL_... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 BECKER_CENTRAL_... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDR p.V1041L 4 55956194 55956194 BECKER_CENTRAL_... 37 Missense_Mutation SNP C A uc003has.2 KDR_uc003hat.1_... Hybrid_Cap... view
KLK7 19 51480672 51480675 BECKER_CENTRAL_... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LATS1 p.G823V 6 150001136 150001136 BECKER_CENTRAL_... 37 Missense_Mutation SNP C A uc003qmu.1 LATS1_uc010kif.... Hybrid_Cap... view
MAF 16 79628537 79628537 BECKER_CENTRAL_... 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAF 16 79628325 79628325 BECKER_CENTRAL_... 37 3'UTR Del A - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 BECKER_CENTRAL_... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 BECKER_CENTRAL_... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 BECKER_CENTRAL_... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 6 161522844 161522844 BECKER_CENTRAL_... 37 Intron SNP T C uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap... view
MARK1 1 220754562 220754562 BECKER_CENTRAL_... 37 Intron SNP A G uc009xdw.2 MARK1_uc001hml.... Hybrid_Cap... view
MET p.L604V 7 116395517 116395517 BECKER_CENTRAL_... 37 Missense_Mutation SNP C G uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MLH1 3 37092174 37092176 BECKER_CENTRAL_... 37 3'UTR Del TTC - uc003cgl.2 MLH1_uc011aye.1... Hybrid_Cap...
MSN p.V70L X 64949315 64949315 BECKER_CENTRAL_... 37 Missense_Mutation SNP G T uc004dwf.2 Hybrid_Cap... view
MYH1 p.A1469S 17 10400730 10400730 BECKER_CENTRAL_... 37 Missense_Mutation SNP C A uc002gmo.2 Hybrid_Cap... view
NCAM1 11 112832307 112832308 BECKER_CENTRAL_... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 BECKER_CENTRAL_... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 BECKER_CENTRAL_... 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK9 p.G658S 14 75567725 75567725 BECKER_CENTRAL_... 37 Missense_Mutation SNP C T uc001xrl.2 NEK9_uc001xrk.2... Hybrid_Cap... view
NEK9 14 75573124 75573124 BECKER_CENTRAL_... 37 Intron SNP C A uc001xrl.2 NEK9_uc001xrk.2... Hybrid_Cap... view
NPM1 5 170837734 170837734 BECKER_CENTRAL_... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 BECKER_CENTRAL_... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 BECKER_CENTRAL_... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
OBSCN p.G958E 1 228412379 228412379 BECKER_CENTRAL_... 37 Missense_Mutation SNP G A uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap... view
OBSCN p.A6838fs 1 228558993 228558994 BECKER_CENTRAL_... 37 Frame_Shift_Del Del CA - uc009xez.1 OBSCN_uc001hsr.... Hybrid_Cap...
OR4E2 p.L237V 14 22134005 22134005 BECKER_CENTRAL_... 37 Missense_Mutation SNP C G uc010tmd.1 Hybrid_Cap... view
PAPPA p.E705V 9 118989712 118989712 BECKER_CENTRAL_... 37 Missense_Mutation SNP A T uc004bjn.2 PAPPA_uc011lxp.... Hybrid_Cap... view
PAX3 2 223158653 223158653 BECKER_CENTRAL_... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.Q1665fs 1 144873963 144873963 BECKER_CENTRAL_... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.S1529R 1 144877100 144877100 BECKER_CENTRAL_... 37 Missense_Mutation SNP G C uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDE4DIP p.V486fs 1 144917828 144917828 BECKER_CENTRAL_... 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP 1 144994860 144994861 BECKER_CENTRAL_... 37 5'UTR DNP AC GT rs2442640 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDGFRA 4 55131002 55131002 BECKER_CENTRAL_... 37 Intron Del A - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PDK4 7 95221928 95221928 BECKER_CENTRAL_... 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PGR 11 100933598 100933599 BECKER_CENTRAL_... 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIP5K1C p.D571H 19 3641779 3641779 BECKER_CENTRAL_... 37 Missense_Mutation SNP C G uc010xhr.1 PIP5K1C_uc002ly... Hybrid_Cap... view
PLCB2 p.A1031V 15 40582983 40582983 BECKER_CENTRAL_... 37 Missense_Mutation SNP G A uc001zld.2 PLCB2_uc001zlc.... Hybrid_Cap... view
PNCK X 152938243 152938243 BECKER_CENTRAL_... 37 Intron SNP T C uc011myu.1 PNCK_uc011myt.1... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 BECKER_CENTRAL_... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 BECKER_CENTRAL_... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RELA p.Y371Y 11 65422425 65422425 BECKER_CENTRAL_... 37 Silent SNP A G uc010ron.1 RELA_uc001ofg.2... Hybrid_Cap... view
ROBO2 p.Q994R 3 77651475 77651475 BECKER_CENTRAL_... 37 Missense_Mutation SNP A G uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap... view
ROBO2 3 77666937 77666937 BECKER_CENTRAL_... 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
ROS1 p.V726I 6 117706974 117706974 BECKER_CENTRAL_... 37 Missense_Mutation SNP C T uc003pxp.1 ROS1_uc011ebi.1... Hybrid_Cap... view
RPS6KL1 14 75373626 75373627 BECKER_CENTRAL_... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SPTAN1 p.V1268A 9 131367396 131367396 BECKER_CENTRAL_... 37 Missense_Mutation SNP T C uc004bvm.3 SPTAN1_uc011mbh... Hybrid_Cap... view
STK31 7 23872024 23872025 BECKER_CENTRAL_... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TAOK2 p.G1087R 16 29998831 29998831 BECKER_CENTRAL_... 37 Missense_Mutation SNP G C uc010bzm.1 BOLA2_uc010bzb.... Hybrid_Cap... view
TEC 4 48139307 48139310 BECKER_CENTRAL_... 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TMEM123 11 102269398 102269398 BECKER_CENTRAL_... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 BECKER_CENTRAL_... 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP53 p.Y126_splice 17 7578555 7578555 BECKER_CENTRAL_... 37 Splice_Site_SNP SNP C T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRPS1 8 116635872 116635873 BECKER_CENTRAL_... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN p.L7077F 2 179582770 179582770 BECKER_CENTRAL_... 37 Missense_Mutation SNP T G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN 2 179603984 179603984 BECKER_CENTRAL_... 37 Intron SNP T C rs34706803 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 BECKER_CENTRAL_... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VPS13B p.V1987L 8 100654702 100654702 BECKER_CENTRAL_... 37 Missense_Mutation SNP G T uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view