Annotation Summary for Cell Line: CAL-120  

Cell line primary name: CAL-120
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: NS
Notes:
Source: DSMZ
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_H01_474610
SNP arrays: CHARY_p_NCLE_DNAAffy9_GenomeWideSNP_6_G06_490466
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in CAL-120

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 CAL120_BREAST 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 CAL120_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP4 p.A535T X 49957761 49957761 CAL120_BREAST 37 Missense_Mutation SNP C T uc004dow.1 AKAP4_uc004dov.... Hybrid_Cap... view
APC p.W2547C 5 112178932 112178932 CAL120_BREAST 37 Missense_Mutation SNP G T uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
BCR 22 23631813 23631814 CAL120_BREAST 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 CAL120_BREAST 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CABC1 1 227171736 227171737 CAL120_BREAST 37 Intron Ins - T rs1574184 uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CARD11 p.R891L 7 2956955 2956955 CAL120_BREAST 37 Missense_Mutation SNP C A uc003smv.2 Hybrid_Cap... view
CDK11A p.Y579fs 1 1635536 1635537 CAL120_BREAST 37 Frame_Shift_Ins Ins - A uc009vks.2 CDK11B_uc001ags... Hybrid_Cap...
CDK18 1 205495890 205495891 CAL120_BREAST 37 Intron Del CT - uc001hcr.2 CDK18_uc010pri.... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 CAL120_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 CAL120_BREAST 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSF1R p.R106Q 5 149459890 149459890 CAL120_BREAST 37 Missense_Mutation SNP C T uc003lrl.2 CSF1R_uc011dcd.... Hybrid_Cap... view
CYP24A1 p.T330M 20 52779257 52779257 CAL120_BREAST 37 Missense_Mutation SNP G A uc002xwv.2 CYP24A1_uc002xw... Hybrid_Cap... view
DAXX p.K69K 6 33289532 33289532 CAL120_BREAST 37 Silent SNP T C uc011dre.1 DAXX_uc011drd.1... Hybrid_Cap... view
EIF2AK2 2 37334410 37334410 CAL120_BREAST 37 3'UTR SNP A T uc010ynh.1 EIF2AK2_uc010fa... Hybrid_Cap... view
EP300 22 41574970 41574972 CAL120_BREAST 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA3 p.P787T 3 89498387 89498387 CAL120_BREAST 37 Missense_Mutation SNP C A uc003dqy.2 EPHA3_uc010hon.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 CAL120_BREAST 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
FANCG p.W122R 9 35078284 35078284 CAL120_BREAST 37 Missense_Mutation SNP A G uc003zwb.1 FANCG_uc003zwa.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 CAL120_BREAST 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 CAL120_BREAST 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FN1 2 216244182 216244185 CAL120_BREAST 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FOXO1 p.I173M 13 41239831 41239831 CAL120_BREAST 37 Missense_Mutation SNP G C uc001uxl.3 Hybrid_Cap... view
FOXO4 X 70322138 70322139 CAL120_BREAST 37 3'UTR Ins - G uc004dys.1 FOXO4_uc010nkz.... Hybrid_Cap...
GRIA3 X 122318386 122318387 CAL120_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 CAL120_BREAST 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIPK3 p.E817K 11 33370147 33370147 CAL120_BREAST 37 Missense_Mutation SNP G A uc001mul.1 HIPK3_uc001mum.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 CAL120_BREAST 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HNRNPA2B1 p.R352Q 7 26232143 26232143 CAL120_BREAST 37 Missense_Mutation SNP C T uc003sxr.3 HNRNPA2B1_uc003... Hybrid_Cap... view
HSP90B1 p.E791del 12 104341188 104341190 CAL120_BREAST 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 CAL120_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB1 10 33197131 33197134 CAL120_BREAST 37 Intron Del CTTT - rs116966876 uc001iwq.3 ITGB1_uc001iwp.... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 CAL120_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDM6A p.V867F X 44929343 44929343 CAL120_BREAST 37 Missense_Mutation SNP G T uc011mkz.1 KDM6A_uc010nhk.... Hybrid_Cap... view
KLK7 19 51480672 51480675 CAL120_BREAST 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LRP1B p.Y1664* 2 141598609 141598609 CAL120_BREAST 37 Nonsense_Mutation SNP G C uc002tvj.1 Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 CAL120_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 CAL120_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPK11 22 50703228 50703228 CAL120_BREAST 37 3'UTR SNP G A uc003bkr.2 MAPK11_uc010hax... Hybrid_Cap... view
NAV3 p.S39L 12 78225357 78225357 CAL120_BREAST 37 Missense_Mutation SNP C T uc001syp.2 NAV3_uc001syo.2... Hybrid_Cap... view
NAV3 p.S1293C 12 78515848 78515848 CAL120_BREAST 37 Missense_Mutation SNP C G uc001syp.2 NAV3_uc001syo.2... Hybrid_Cap... view
NCAM1 11 112832307 112832308 CAL120_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CAL120_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.QQQ1272del 20 46279815 46279823 CAL120_BREAST 37 In_Frame_Del Del GCAGC... - uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 CAL120_BREAST 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPR1 1 153665919 153665920 CAL120_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
ODZ1 p.P211A X 123870952 123870952 CAL120_BREAST 37 Missense_Mutation SNP G C uc010nqy.2 ODZ1_uc011muj.1... Hybrid_Cap... view
PAX5 9 37034095 37034095 CAL120_BREAST 37 5'UTR Del C - uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 CAL120_BREAST 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 CAL120_BREAST 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 CAL120_BREAST 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 CAL120_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAPGEF2 4 160189219 160189219 CAL120_BREAST 37 5'UTR SNP C T uc003iqg.3 Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 CAL120_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KA5 14 91360733 91360734 CAL120_BREAST 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
STK25 2 242435659 242435662 CAL120_BREAST 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 CAL120_BREAST 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TIE1 1 43788483 43788483 CAL120_BREAST 37 3'UTR SNP T C uc001ciu.2 TIE1_uc010oke.1... Hybrid_Cap... view
TMEM123 11 102269398 102269398 CAL120_BREAST 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP53 p.E224_splice 17 7578175 7578175 CAL120_BREAST 37 Splice_Site_SNP SNP A C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 CAL120_BREAST 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 CAL120_BREAST 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN p.T7918M 2 179577164 179577164 CAL120_BREAST 37 Missense_Mutation SNP G A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
URB2 p.L1274P 1 229781631 229781631 CAL120_BREAST 37 Missense_Mutation SNP T C uc001hts.1 URB2_uc009xfd.1... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 CAL120_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WHSC1L1 8 38133019 38133019 CAL120_BREAST 37 3'UTR SNP G C uc003xli.2 WHSC1L1_uc011lb... Hybrid_Cap... view