Annotation Summary for Cell Line: CAL-29  

Cell line primary name: CAL-29
Cell line aliases:
Gender: F
Site Primary: urinary_tract
Histology: carcinoma
Hist Subtype1: transitional_cell_carcinoma
Notes:
Source: DSMZ
Expression arrays: SILOS_p_NCLE_RNA9_HG-U133_Plus_2_H11_523578
SNP arrays: CHARY_p_NCLE_DNAAffy9_GenomeWideSNP_6_E11_490468
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in CAL-29

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 CAL29_URINARY_T... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 CAL29_URINARY_T... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 CAL29_URINARY_T... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ARAF X 47430973 47430973 CAL29_URINARY_T... 37 3'UTR SNP C T uc011mlq.1 Hybrid_Cap... view
ATP13A5 p.E1193K 3 192992911 192992911 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc011bsq.1 Hybrid_Cap... view
BCR 22 23631813 23631814 CAL29_URINARY_T... 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BMP4 p.T202M 14 54417372 54417372 CAL29_URINARY_T... 37 Missense_Mutation SNP G A uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 CAL29_URINARY_T... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CSK 15 75090887 75090887 CAL29_URINARY_T... 37 Intron SNP C T rs34072318 uc010bkb.1 CSK_uc010bka.2_... Hybrid_Cap... view
CTSS 1 150722372 150722372 CAL29_URINARY_T... 37 Intron SNP C T uc001evn.2 CTSS_uc010pcj.1... Hybrid_Cap... view
CXCL12 10 44873992 44873993 CAL29_URINARY_T... 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DAB1 p.A378T 1 57480868 57480868 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc001cys.1 DAB1_uc001cyt.1... Hybrid_Cap... view
EIF4E 4 99808137 99808141 CAL29_URINARY_T... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EIF4G1 p.GEA479del 3 184039767 184039775 CAL29_URINARY_T... 37 In_Frame_Del Del AGGAG... - uc010hxx.2 EIF4G1_uc003fno... Hybrid_Cap...
EPHA6 3 97367230 97367231 CAL29_URINARY_T... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB6 p.P349S 7 142563328 142563328 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap... view
ERCC6 p.L789V 10 50684278 50684278 CAL29_URINARY_T... 37 Missense_Mutation SNP G C uc001jhs.3 ERCC6_uc009xod.... Hybrid_Cap... view
ETV1 7 14028708 14028708 CAL29_URINARY_T... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 CAL29_URINARY_T... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 CAL29_URINARY_T... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 CAL29_URINARY_T... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 CAL29_URINARY_T... 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FN1 2 216244182 216244185 CAL29_URINARY_T... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GATA1 p.G31E X 48649608 48649608 CAL29_URINARY_T... 37 Missense_Mutation SNP G A uc004dkq.3 Hybrid_Cap... view
GCK p.G262V 7 44187330 44187330 CAL29_URINARY_T... 37 Missense_Mutation SNP C A uc003tkk.1 GCK_uc003tkh.1_... Hybrid_Cap... view
GCNT2 6 10556530 10556530 CAL29_URINARY_T... 37 Intron SNP C T rs56054840 uc010joo.2 GCNT2_uc010jol.... Hybrid_Cap... view
GCNT2 6 10586204 10586204 CAL29_URINARY_T... 37 Intron SNP C A uc010joo.2 GCNT2_uc010jol.... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 CAL29_URINARY_T... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 CAL29_URINARY_T... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HERC2 p.V830M 15 28502236 28502236 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc001zbj.2 HERC2_uc001zbl.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 CAL29_URINARY_T... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
ILK 11 6630029 6630029 CAL29_URINARY_T... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB1 10 33197131 33197134 CAL29_URINARY_T... 37 Intron Del CTTT - rs116966876 uc001iwq.3 ITGB1_uc001iwp.... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 CAL29_URINARY_T... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDM6A p.E1154K X 44942724 44942724 CAL29_URINARY_T... 37 Missense_Mutation SNP G A uc011mkz.1 KDM6A_uc004dge.... Hybrid_Cap... view
KLK7 19 51480672 51480675 CAL29_URINARY_T... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LIMK2 p.R634Q 22 31674411 31674411 CAL29_URINARY_T... 37 Missense_Mutation SNP G A uc003akh.2 LIMK2_uc003aki.... Hybrid_Cap... view
LRP6 12 12419797 12419797 CAL29_URINARY_T... 37 5'UTR SNP G A uc001rah.3 LRP6_uc010shl.1... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 CAL29_URINARY_T... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K6 17 67517333 67517333 CAL29_URINARY_T... 37 Intron SNP G A uc002jij.2 MAP2K6_uc002jii... Hybrid_Cap... view
MAP3K1 p.T949del 5 56177849 56177851 CAL29_URINARY_T... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 CAL29_URINARY_T... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 p.A1199del 6 161519351 161519353 CAL29_URINARY_T... 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 CAL29_URINARY_T... 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MCF2 p.K783N X 138678864 138678864 CAL29_URINARY_T... 37 Missense_Mutation SNP C G uc011mwo.1 MCF2_uc004fau.2... Hybrid_Cap... view
MECOM 3 169381262 169381262 CAL29_URINARY_T... 37 5'UTR SNP G C rs10581416 uc011bpj.1 MECOM_uc011bpk.... Hybrid_Cap... view
MLL3 p.D1497H 7 151891543 151891543 CAL29_URINARY_T... 37 Missense_Mutation SNP C G uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MLL3 p.R1351M 7 151900059 151900059 CAL29_URINARY_T... 37 Missense_Mutation SNP C A uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 CAL29_URINARY_T... 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 CAL29_URINARY_T... 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 CAL29_URINARY_T... 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
MYST4 p.S1850F 10 76790131 76790131 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc001jwn.1 MYST4_uc001jwo.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 CAL29_URINARY_T... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CAL29_URINARY_T... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 CAL29_URINARY_T... 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 CAL29_URINARY_T... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFATC1 18 77287653 77287654 CAL29_URINARY_T... 37 3'UTR Del AA - uc010xfg.1 NFATC1_uc002lnd... Hybrid_Cap...
NLRP3 1 247611982 247611982 CAL29_URINARY_T... 37 3'UTR Del C - uc001icr.2 NLRP3_uc001ics.... Hybrid_Cap...
NPR1 1 153665919 153665920 CAL29_URINARY_T... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 CAL29_URINARY_T... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NSD1 p.S1890P 5 176707611 176707611 CAL29_URINARY_T... 37 Missense_Mutation SNP T C uc003mfr.3 NSD1_uc003mft.3... Hybrid_Cap... view
NTRK3 p.E725_splice 15 88428924 88428924 CAL29_URINARY_T... 37 Splice_Site_SNP SNP C A uc002bme.1 NTRK3_uc002bmh.... Hybrid_Cap... view
PAK4 p.V420M 19 39665977 39665977 CAL29_URINARY_T... 37 Missense_Mutation SNP G A uc002okj.1 PAK4_uc002okl.1... Hybrid_Cap... view
PAX3 2 223158653 223158653 CAL29_URINARY_T... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX5 9 37034095 37034095 CAL29_URINARY_T... 37 5'UTR Del C - uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap...
PGR 11 100933598 100933599 CAL29_URINARY_T... 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 CAL29_URINARY_T... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CA p.H1047R 3 178952085 178952085 CAL29_URINARY_T... 37 Missense_Mutation SNP A G uc003fjk.2 Hybrid_Cap... view
PLCB2 p.Q651K 15 40586577 40586577 CAL29_URINARY_T... 37 Missense_Mutation SNP G T uc001zld.2 PLCB2_uc010bbo.... Hybrid_Cap... view
PRKD3 2 37480319 37480320 CAL29_URINARY_T... 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 CAL29_URINARY_T... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAPGEF2 4 160189224 160189224 CAL29_URINARY_T... 37 5'UTR SNP A T uc003iqg.3 Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 CAL29_URINARY_T... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
ROBO2 3 77666937 77666937 CAL29_URINARY_T... 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RPS6KB1 17 58024224 58024225 CAL29_URINARY_T... 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
SP1 p.S296L 12 53776618 53776618 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc001scw.2 SP1_uc010sog.1_... Hybrid_Cap... view
SPTAN1 p.R1558Q 9 131371478 131371478 CAL29_URINARY_T... 37 Missense_Mutation SNP G A uc004bvm.3 SPTAN1_uc004bvl... Hybrid_Cap... view
STK31 7 23872024 23872025 CAL29_URINARY_T... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TAF1L p.E248K 9 32634836 32634836 CAL29_URINARY_T... 37 Missense_Mutation SNP C T uc003zrg.1 Hybrid_Cap... view
TCF21 6 134210497 134210498 CAL29_URINARY_T... 37 5'UTR Ins - TCTC rs35199378 uc003qei.3 TCF21_uc003qej.... Hybrid_Cap...
TEC 4 48139307 48139310 CAL29_URINARY_T... 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TMEM123 11 102269398 102269398 CAL29_URINARY_T... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNIK 3 170800468 170800468 CAL29_URINARY_T... 37 Intron SNP G A uc003fhh.2 TNIK_uc003fhi.2... Hybrid_Cap... view
TNN p.A745D 1 175086189 175086189 CAL29_URINARY_T... 37 Missense_Mutation SNP C A uc001gkl.1 Hybrid_Cap... view
TP53 p.R282W 17 7577094 7577094 CAL29_URINARY_T... 37 Missense_Mutation SNP G A rs28934574 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940211 114940212 CAL29_URINARY_T... 37 3'UTR Ins - T rs66490349 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPS1 8 116635872 116635873 CAL29_URINARY_T... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 CAL29_URINARY_T... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...