Annotation Summary for Cell Line: CAL-85-1  

Cell line primary name: CAL-85-1
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: NS
Notes:
Source: DSMZ
Expression arrays: PARES_p_NCLE_RNA_Redo_HG-U133_Plus_2_A11_257618
SNP arrays: ARLES_p_NCLE_DNAAffy2_S_GenomeWideSNP_6_B04_256032
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in CAL-85-1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 CAL851_BREAST 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM17 2 9630245 9630245 CAL851_BREAST 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM22 p.R284C 7 87757932 87757932 CAL851_BREAST 37 Missense_Mutation SNP C T uc003ujp.1 ADAM22_uc003uji... Hybrid_Cap... view
ADAMTSL3 p.Q1258del 15 84657496 84657498 CAL851_BREAST 37 In_Frame_Del Del AAC - uc002bjz.3 ADAMTSL3_uc010b... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 CAL851_BREAST 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ARNT 1 150784460 150784460 CAL851_BREAST 37 3'UTR SNP T A uc001evr.1 ARNT_uc010pck.1... Hybrid_Cap... view
BCL9 p.G696A 1 147092048 147092048 CAL851_BREAST 37 Missense_Mutation SNP G C uc001epq.2 BCL9_uc010ozr.1... Hybrid_Cap... view
BRD2 6 32948607 32948608 CAL851_BREAST 37 3'UTR Ins - T rs1049414;rs114195059 uc010juh.2 BRD2_uc003ocn.3... Hybrid_Cap...
CD44 p.R46P 11 35198191 35198191 CAL851_BREAST 37 Missense_Mutation SNP G C uc001mvu.2 CD44_uc001mvv.2... Hybrid_Cap... view
CD44 p.G629V 11 35240875 35240875 CAL851_BREAST 37 Missense_Mutation SNP G T uc001mvu.2 CD44_uc001mvv.2... Hybrid_Cap... view
CD44 p.N688N 11 35250715 35250715 CAL851_BREAST 37 Silent SNP T C uc001mvu.2 CD44_uc001mvv.2... Hybrid_Cap... view
CDC42BPB p.V666G 14 103435052 103435052 CAL851_BREAST 37 Missense_Mutation SNP A C uc001ymi.1 Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 CAL851_BREAST 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CUBN p.T2974M 10 16919081 16919081 CAL851_BREAST 37 Missense_Mutation SNP G A uc001ioo.2 CUBN_uc009xjq.1... Hybrid_Cap... view
DBF4 p.I271F 7 87530080 87530080 CAL851_BREAST 37 Missense_Mutation SNP A T uc003ujf.1 DBF4_uc003ujh.1... Hybrid_Cap... view
EIF4G1 p.K1081T 3 184043738 184043738 CAL851_BREAST 37 Missense_Mutation SNP A C uc010hxx.2 EIF4G1_uc003fnp... Hybrid_Cap... view
EP300 22 41574970 41574972 CAL851_BREAST 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
ERBB4 p.M1017T 2 212285251 212285251 CAL851_BREAST 37 Missense_Mutation SNP A G uc002veg.1 ERBB4_uc002veh.... Hybrid_Cap... view
ERCC2 19 45854819 45854819 CAL851_BREAST 37 3'UTR SNP C T uc002pbj.2 ERCC2_uc002pbh.... Hybrid_Cap... view
GTSE1 p.P595L 22 46724644 46724644 CAL851_BREAST 37 Missense_Mutation SNP C T uc011aqy.1 GTSE1_uc011aqz.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 CAL851_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LGR5 p.F787S 12 71978150 71978150 CAL851_BREAST 37 Missense_Mutation SNP T C uc001swl.2 LGR5_uc001swm.2... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 CAL851_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 CAL851_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP4K2 p.R384Q 11 64564992 64564992 CAL851_BREAST 37 Missense_Mutation SNP C T uc001obh.2 MAP4K2_uc001obg... Hybrid_Cap... view
MAST2 p.R535Q 1 46489476 46489476 CAL851_BREAST 37 Missense_Mutation SNP G A uc001cov.2 MAST2_uc001cow.... Hybrid_Cap... view
MYST4 p.E1104del 10 76781906 76781908 CAL851_BREAST 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CAL851_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 CAL851_BREAST 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NFIA 1 61921185 61921186 CAL851_BREAST 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
PCDH15 p.E1266A 10 55616959 55616959 CAL851_BREAST 37 Missense_Mutation SNP T G uc010qhy.1 PCDH15_uc010qhq... Hybrid_Cap... view
PDE4DIP 1 144931254 144931254 CAL851_BREAST 37 Intron SNP T C uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PPM1E p.G701R 17 57058225 57058225 CAL851_BREAST 37 Missense_Mutation SNP G C uc002iwx.2 PPM1E_uc010ddd.... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 CAL851_BREAST 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RUNX2 p.P253L 6 45459750 45459750 CAL851_BREAST 37 Missense_Mutation SNP C T uc011dvx.1 RUNX2_uc011dvy.... Hybrid_Cap... view
TEC 4 48139307 48139310 CAL851_BREAST 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TMPO 12 98941643 98941643 CAL851_BREAST 37 3'UTR SNP T C uc001tfj.2 TMPO_uc001tfk.2... Hybrid_Cap... view
TP53 p.K132E 17 7578536 7578536 CAL851_BREAST 37 Missense_Mutation SNP T C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TPR p.V1171I 1 186313129 186313129 CAL851_BREAST 37 Missense_Mutation SNP C T uc001grv.2 Hybrid_Cap... view
TRPS1 8 116635872 116635873 CAL851_BREAST 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
VPS13B p.T1276I 8 100493987 100493987 CAL851_BREAST 37 Missense_Mutation SNP C T uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view