Annotation Summary for Cell Line: CFPAC-1  

Cell line primary name: CFPAC-1
Cell line aliases:
Gender: M
Site Primary: pancreas
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_B07_383738
SNP arrays: FASTS_p_NCLE_DNAAffy4_S_GenomeWideSNP_6_C02_335238
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in CFPAC-1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 CFPAC1_PANCREAS 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ACACA 17 35766564 35766564 CFPAC1_PANCREAS 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM12 10 127705654 127705655 CFPAC1_PANCREAS 37 3'UTR Del AA - uc001ljk.2 ADAM12_uc010qul... Hybrid_Cap...
ADAM17 2 9630245 9630245 CFPAC1_PANCREAS 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 CFPAC1_PANCREAS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 14 78390583 78390583 CFPAC1_PANCREAS 37 Intron SNP G A uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap... view
ASPH p.A264_splice 8 62550924 62550925 CFPAC1_PANCREAS 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
BCR 22 23631813 23631814 CFPAC1_PANCREAS 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CHD9 p.2164_2165SS>S 16 53338410 53338412 CFPAC1_PANCREAS 37 In_Frame_Del Del TTC - uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 CFPAC1_PANCREAS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196673 19196674 CFPAC1_PANCREAS 37 Intron Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CYP27B1 p.T220N 12 58158925 58158925 CFPAC1_PANCREAS 37 Missense_Mutation SNP G T uc001spz.1 CYP27B1_uc001sq... Hybrid_Cap... view
EIF2AK3 p.F335_splice 2 88890125 88890125 CFPAC1_PANCREAS 37 Splice_Site_SNP SNP T A uc002stc.3 Hybrid_Cap... view
ENHO 9 34521299 34521299 CFPAC1_PANCREAS 37 3'UTR SNP C T uc003zun.1 ENHO_uc003zuo.2... Hybrid_Cap... view
EPHA5 4 66189753 66189754 CFPAC1_PANCREAS 37 3'UTR Ins - T rs67487372 uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap...
EPHA6 3 97367230 97367231 CFPAC1_PANCREAS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHA7 p.Q675K 6 93967904 93967904 CFPAC1_PANCREAS 37 Missense_Mutation SNP G T uc003poe.2 EPHA7_uc003pof.... Hybrid_Cap... view
ETV1 7 14028708 14028708 CFPAC1_PANCREAS 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 CFPAC1_PANCREAS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 CFPAC1_PANCREAS 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 CFPAC1_PANCREAS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNA X 153577132 153577133 CFPAC1_PANCREAS 37 3'UTR Ins - CA rs10692455;rs71733538 uc004fkk.2 FLNA_uc004fki.2... Hybrid_Cap...
FN1 2 216244182 216244185 CFPAC1_PANCREAS 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 CFPAC1_PANCREAS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 CFPAC1_PANCREAS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 CFPAC1_PANCREAS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HERC2 p.R2800C 15 28437160 28437160 CFPAC1_PANCREAS 37 Missense_Mutation SNP G A uc001zbj.2 HERC2_uc001zbk.... Hybrid_Cap... view
HMMR p.Q207R 5 162898439 162898439 CFPAC1_PANCREAS 37 Missense_Mutation SNP A G uc003lzh.2 HMMR_uc003lzf.2... Hybrid_Cap... view
HNF1A 12 121434630 121434631 CFPAC1_PANCREAS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 CFPAC1_PANCREAS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 CFPAC1_PANCREAS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 CFPAC1_PANCREAS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KRAS p.G12V 12 25398284 25398284 CFPAC1_PANCREAS 37 Missense_Mutation SNP C A uc001rgp.1 KRAS_uc001rgq.1... Hybrid_Cap... view
LAMA1 p.G1107R 18 7013858 7013858 CFPAC1_PANCREAS 37 Missense_Mutation SNP C G uc002knm.2 LAMA1_uc010wzj.... Hybrid_Cap... view
LRP1B p.S1225I 2 141660581 141660581 CFPAC1_PANCREAS 37 Missense_Mutation SNP C A uc002tvj.1 LRP1B_uc010fnl.... Hybrid_Cap... view
LRRK2 p.D174G 12 40631855 40631855 CFPAC1_PANCREAS 37 Missense_Mutation SNP A G uc001rmg.3 Hybrid_Cap... view
MAF 16 79628537 79628537 CFPAC1_PANCREAS 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAF 16 79628325 79628325 CFPAC1_PANCREAS 37 3'UTR Del A - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 CFPAC1_PANCREAS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 CFPAC1_PANCREAS 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 CFPAC1_PANCREAS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 CFPAC1_PANCREAS 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MEN1 11 64571680 64571680 CFPAC1_PANCREAS 37 3'UTR SNP G A uc001obj.2 MAP4K2_uc001obh... Hybrid_Cap... view
MLLT6 17 36881873 36881873 CFPAC1_PANCREAS 37 3'UTR Del C - uc002hqi.3 MLLT6_uc002hqk.... Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 CFPAC1_PANCREAS 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MYLK 3 123332875 123332876 CFPAC1_PANCREAS 37 3'UTR Ins - TT rs35930843;rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 CFPAC1_PANCREAS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CFPAC1_PANCREAS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA2 p.P1021L 8 71050534 71050534 CFPAC1_PANCREAS 37 Missense_Mutation SNP G A uc003xyn.1 NCOA2_uc011lfb.... Hybrid_Cap... view
NCOA3 p.Q1276del 20 46279864 46279866 CFPAC1_PANCREAS 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK11 p.E603* 3 131068489 131068489 CFPAC1_PANCREAS 37 Nonsense_Mutation SNP G T uc003eny.2 NEK11_uc003eoa.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 CFPAC1_PANCREAS 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61921185 61921186 CFPAC1_PANCREAS 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NIPBL 5 37065069 37065070 CFPAC1_PANCREAS 37 3'UTR Ins - A rs71759480 uc003jkl.3 NIPBL_uc003jkk.... Hybrid_Cap...
NPR1 1 153665919 153665920 CFPAC1_PANCREAS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
PAX3 2 223158653 223158653 CFPAC1_PANCREAS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDCD11 p.A1202V 10 105194045 105194045 CFPAC1_PANCREAS 37 Missense_Mutation SNP C T uc001kwy.1 Hybrid_Cap... view
PDGFRA 4 55131002 55131002 CFPAC1_PANCREAS 37 Intron Del A - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PGGT1B 5 114548071 114548072 CFPAC1_PANCREAS 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 CFPAC1_PANCREAS 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIP4K2A 10 22825887 22825887 CFPAC1_PANCREAS 37 3'UTR Del C - uc001irl.3 PIP4K2A_uc010qc... Hybrid_Cap...
PLCG2 16 81954996 81954997 CFPAC1_PANCREAS 37 Intron Ins - T uc002fgt.2 PLCG2_uc010chg.... Hybrid_Cap...
PMS1 2 190670539 190670540 CFPAC1_PANCREAS 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKD1 p.32_33insSG 14 30396622 30396623 CFPAC1_PANCREAS 37 In_Frame_Ins Ins - CCCGGA rs45441697 uc001wqh.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 CFPAC1_PANCREAS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKDC p.F649L 8 48842520 48842520 CFPAC1_PANCREAS 37 Missense_Mutation SNP A G rs55811715 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap... view
PTEN 10 89725293 89725294 CFPAC1_PANCREAS 37 3'UTR Ins - T rs1044487 uc001kfb.2 Hybrid_Cap...
RAPGEF2 4 160189224 160189224 CFPAC1_PANCREAS 37 5'UTR SNP A T uc003iqg.3 Hybrid_Cap... view
RASGRF1 15 79277150 79277151 CFPAC1_PANCREAS 37 Intron Ins - C rs67045840;rs77640668 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 CFPAC1_PANCREAS 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
SSU72 1 1479105 1479106 CFPAC1_PANCREAS 37 Intron Ins - CT rs33935832;rs79833722 uc001agd.2 SSU72_uc009vkg.... Hybrid_Cap...
SSU72 p.E113D 1 1480268 1480268 CFPAC1_PANCREAS 37 Missense_Mutation SNP C A uc001agd.2 SSU72_uc009vkg.... Hybrid_Cap... view
STRADA 17 61781331 61781332 CFPAC1_PANCREAS 37 Intron Ins - AGAACC rs66701913 uc002jbm.2 STRADA_uc002jbn... Hybrid_Cap...
TEC 4 48139307 48139310 CFPAC1_PANCREAS 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TFR2 p.M711I 7 100224389 100224389 CFPAC1_PANCREAS 37 Missense_Mutation SNP C T uc003uvv.1 TFR2_uc010lhc.1... Hybrid_Cap... view
TP53 p.C242R 17 7577557 7577557 CFPAC1_PANCREAS 37 Missense_Mutation SNP A G uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 CFPAC1_PANCREAS 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 CFPAC1_PANCREAS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 CFPAC1_PANCREAS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TYK2 p.V15A 19 10489039 10489039 CFPAC1_PANCREAS 37 Missense_Mutation SNP A G uc002moc.3 TYK2_uc010dxe.2... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 CFPAC1_PANCREAS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZAP70 2 98351655 98351655 CFPAC1_PANCREAS 37 Intron Del G - uc002syd.1 ZAP70_uc010yvf.... Hybrid_Cap...