Annotation Summary for Cell Line: CGTH-W-1  

Cell line primary name: CGTH-W-1
Cell line aliases:
Gender: F
Site Primary: thyroid
Histology: carcinoma
Hist Subtype1: follicular_carcinoma
Notes: Identical lines: SW579 and CGTH-W-1 share high SNP identity. CGTH-W-1 really is SW579.
Source: DSMZ
Expression arrays: BITTS_p_NCLE_RNA12_HG-U133_Plus_2_B01_698818
SNP arrays: VAULT_p_NCLE_DNAAffy14_GenomeWideSNP_6_C10_698660
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in CGTH-W-1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 CGTHW1_THYROID 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM17 2 9630245 9630245 CGTHW1_THYROID 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 CGTHW1_THYROID 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADARB2 p.W725* 10 1229178 1229178 CGTHW1_THYROID 37 Nonsense_Mutation SNP C T uc009xhq.2 ADARB2_uc009xhp... Hybrid_Cap... view
AFF4 p.D60E 5 132270577 132270577 CGTHW1_THYROID 37 Missense_Mutation SNP A T uc003kyd.2 AFF4_uc011cxk.1... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 CGTHW1_THYROID 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP6 p.R1069C 14 33204921 33204921 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc001wrq.2 Hybrid_Cap... view
AURKC 19 57742494 57742507 CGTHW1_THYROID 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCR 22 23631813 23631814 CGTHW1_THYROID 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 CGTHW1_THYROID 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BIRC5 17 76219784 76219785 CGTHW1_THYROID 37 3'UTR Ins - AA uc002jvf.2 BIRC5_uc002jvg.... Hybrid_Cap...
CABC1 1 227171585 227171585 CGTHW1_THYROID 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CABC1 1 227171736 227171737 CGTHW1_THYROID 37 Intron Ins - T rs1574184 uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CACNB2 10 18828721 18828722 CGTHW1_THYROID 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CARS p.A241T 11 3059360 3059360 CGTHW1_THYROID 37 Missense_Mutation SNP C T rs12796489 uc001lxf.2 CARS_uc001lxe.2... Hybrid_Cap... view
CCR5 p.Y68S 3 46414596 46414596 CGTHW1_THYROID 37 Missense_Mutation SNP A C uc003cpo.3 CCR5_uc010hjd.2... Hybrid_Cap... view
CDC5L p.I6M 6 44355578 44355578 CGTHW1_THYROID 37 Missense_Mutation SNP C G uc003oxl.2 Hybrid_Cap... view
CDK11B 1 1654066 1654068 CGTHW1_THYROID 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD9 p.N2661S 16 53358095 53358095 CGTHW1_THYROID 37 Missense_Mutation SNP A G uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap... view
CHIC2 4 54876132 54876132 CGTHW1_THYROID 37 3'UTR Del C - rs4437313 uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 CGTHW1_THYROID 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CXCR2 p.I331M 2 219000517 219000517 CGTHW1_THYROID 37 Missense_Mutation SNP A G uc002vgz.1 CXCR2_uc002vha.... Hybrid_Cap... view
CYFIP1 p.H1024Y 15 22997824 22997824 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc001yus.2 CYFIP1_uc001yut... Hybrid_Cap... view
DDR2 1 162750211 162750212 CGTHW1_THYROID 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DNAH8 6 38952247 38952252 CGTHW1_THYROID 37 Intron Del CACAC... - uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
DYRK1A 21 38884966 38884967 CGTHW1_THYROID 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
DYRK1A p.T738I 21 38884755 38884755 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap... view
EPHA6 3 97367230 97367231 CGTHW1_THYROID 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB4 p.R795Q 7 100404142 100404142 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc003uwn.1 EPHB4_uc003uwm.... Hybrid_Cap... view
ERBB4 p.G1049E 2 212252707 212252707 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc002veg.1 ERBB4_uc002veh.... Hybrid_Cap... view
ETV1 7 14028708 14028708 CGTHW1_THYROID 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
F8 p.S1139F X 154158649 154158649 CGTHW1_THYROID 37 Missense_Mutation SNP G A uc004fmt.2 Hybrid_Cap... view
FANCD2 3 10143086 10143087 CGTHW1_THYROID 37 3'UTR Ins - A uc003bux.1 FANCD2_uc003buy... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 CGTHW1_THYROID 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 CGTHW1_THYROID 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 CGTHW1_THYROID 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 CGTHW1_THYROID 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FNTA p.W208* 8 42927440 42927440 CGTHW1_THYROID 37 Nonsense_Mutation SNP G A uc003xps.2 FNTA_uc003xpt.2... Hybrid_Cap... view
FZD1 p.93_94insP 7 90894459 90894460 CGTHW1_THYROID 37 In_Frame_Ins Ins - CCG uc003ula.2 Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 CGTHW1_THYROID 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 CGTHW1_THYROID 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 CGTHW1_THYROID 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HGF p.Q727* 7 81331905 81331905 CGTHW1_THYROID 37 Nonsense_Mutation SNP G A uc003uhl.2 HGF_uc003uhm.2_... Hybrid_Cap... view
HIPK1 p.L858P 1 114511072 114511072 CGTHW1_THYROID 37 Missense_Mutation SNP T C uc001eem.2 HIPK1_uc001eel.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 CGTHW1_THYROID 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IGF1R 15 99192755 99192763 CGTHW1_THYROID 37 5'UTR Del TTTTT... - uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap...
IGF1R 15 99460111 99460111 CGTHW1_THYROID 37 Intron SNP C T uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap... view
ILK 11 6630029 6630029 CGTHW1_THYROID 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 CGTHW1_THYROID 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 CGTHW1_THYROID 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LPP p.P207L 3 188327139 188327139 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc003frs.1 LPP_uc011bsg.1_... Hybrid_Cap... view
LRGUK p.C236F 7 133842824 133842824 CGTHW1_THYROID 37 Missense_Mutation SNP G T uc003vrm.1 Hybrid_Cap... view
MAF 16 79628537 79628537 CGTHW1_THYROID 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 CGTHW1_THYROID 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 CGTHW1_THYROID 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 CGTHW1_THYROID 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MFSD4 p.L158H 1 205549832 205549832 CGTHW1_THYROID 37 Missense_Mutation SNP T A uc001hcv.3 MFSD4_uc010prk.... Hybrid_Cap... view
MYH11 16 15876402 15876402 CGTHW1_THYROID 37 Intron SNP A T uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 CGTHW1_THYROID 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CGTHW1_THYROID 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.QQQ1272del 20 46279815 46279823 CGTHW1_THYROID 37 In_Frame_Del Del GCAGC... - uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 CGTHW1_THYROID 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFATC1 18 77287653 77287654 CGTHW1_THYROID 37 3'UTR Del AA - uc010xfg.1 NFATC1_uc002lnd... Hybrid_Cap...
NFIA 1 61921185 61921186 CGTHW1_THYROID 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NPM1 5 170837843 170837843 CGTHW1_THYROID 37 3'UTR SNP G C uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881820 50881821 CGTHW1_THYROID 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 CGTHW1_THYROID 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NRK p.K46N X 105124206 105124206 CGTHW1_THYROID 37 Missense_Mutation SNP G T uc004emd.2 NRK_uc010npc.1_... Hybrid_Cap... view
PAX5 9 37034095 37034095 CGTHW1_THYROID 37 5'UTR Del C - uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 CGTHW1_THYROID 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PHF3 p.C1702Y 6 64422589 64422589 CGTHW1_THYROID 37 Missense_Mutation SNP G A uc003pep.1 PHF3_uc003pen.2... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 CGTHW1_THYROID 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG1 10 52751088 52751089 CGTHW1_THYROID 37 5'UTR Ins - GCT rs67900156;rs71029335 uc001jjm.2 PRKG1_uc010qhp.... Hybrid_Cap...
RAP1GDS1 4 99363349 99363353 CGTHW1_THYROID 37 3'UTR Del TACCA - uc003htw.3 RAP1GDS1_uc003h... Hybrid_Cap...
RASGRF1 15 79277150 79277151 CGTHW1_THYROID 37 Intron Ins - C rs67045840;rs77640668 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 CGTHW1_THYROID 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KB2 p.G231S 11 67200497 67200497 CGTHW1_THYROID 37 Missense_Mutation SNP G A uc001old.2 RPS6KB2_uc001ol... Hybrid_Cap... view
RUNX1T1 p.N298S 8 93003998 93003998 CGTHW1_THYROID 37 Missense_Mutation SNP T C uc011lgi.1 RUNX1T1_uc003yf... Hybrid_Cap... view
SEPT9 17 75494787 75494788 CGTHW1_THYROID 37 3'UTR Ins - C rs5822173 uc002jts.3 SEPT9_uc010wtk.... Hybrid_Cap...
STK31 7 23872024 23872025 CGTHW1_THYROID 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
SULF2 p.G862A 20 46287134 46287134 CGTHW1_THYROID 37 Missense_Mutation SNP C G uc002xto.2 SULF2_uc002xtr.... Hybrid_Cap... view
TACC3 4 1739519 1739527 CGTHW1_THYROID 37 Intron Del GCCAT... - rs114226356 uc003gdo.2 TACC3_uc010ibz.... Hybrid_Cap...
TAOK1 17 27838073 27838074 CGTHW1_THYROID 37 Intron Ins - A uc002hdz.1 TAOK1_uc010wbe.... Hybrid_Cap...
TLR3 4 187006086 187006086 CGTHW1_THYROID 37 3'UTR SNP G A uc003iyq.2 TLR3_uc011ckz.1... Hybrid_Cap... view
TP53 p.I255S 17 7577517 7577517 CGTHW1_THYROID 37 Missense_Mutation SNP A C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 CGTHW1_THYROID 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TPO p.R684C 2 1499804 1499804 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc002qww.2 TPO_uc010ewj.2_... Hybrid_Cap... view
TRIM33 1 114940211 114940212 CGTHW1_THYROID 37 3'UTR Ins - T rs66490349 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPM6 p.E1860V 9 77353520 77353520 CGTHW1_THYROID 37 Missense_Mutation SNP T A uc004ajl.1 TRPM6_uc004ajk.... Hybrid_Cap... view
TRPS1 8 116635872 116635873 CGTHW1_THYROID 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSHR p.T632I 14 81610297 81610297 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc001xvd.1 Hybrid_Cap... view
USP6 17 5076345 5076345 CGTHW1_THYROID 37 3'UTR SNP G C uc002gau.1 USP6_uc002gav.1... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 CGTHW1_THYROID 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VPS13B p.T3508I 8 100866065 100866065 CGTHW1_THYROID 37 Missense_Mutation SNP C T uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view
WEE2 7 141430294 141430294 CGTHW1_THYROID 37 3'UTR SNP G C uc003vwn.2 FLJ40852_uc011k... Hybrid_Cap... view
WHSC1 p.E1099K 4 1962801 1962801 CGTHW1_THYROID 37 Missense_Mutation SNP G A uc003gdz.3 WHSC1_uc003geb.... Hybrid_Cap... view
XPO4 13 21357719 21357719 CGTHW1_THYROID 37 3'UTR SNP A G uc001unq.3 Hybrid_Cap... view
XPO4 p.S498_splice 13 21382722 21382722 CGTHW1_THYROID 37 Splice_Site_SNP SNP T A uc001unq.3 Hybrid_Cap... view