Annotation Summary for Cell Line: CPC-N  

Cell line primary name: CPC-N
Cell line aliases:
Gender:
Site Primary: lung
Histology: carcinoma
Hist Subtype1: small_cell_carcinoma
Notes:
Source: DSMZ
Expression arrays: MAKER_p_NCLE_RNA7_HG-U133_Plus_2_A01_454758
SNP arrays: LIMPS_p_NCLE_DNA2N_GenomeWideSNP_6_D01_246682
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in CPC-N

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ACOXL p.H453L 2 111789280 111789280 CPCN_LUNG 37 Missense_Mutation SNP A T uc010yxk.1 ACOXL_uc010fkc.... Hybrid_Cap... view
ADAM17 2 9630245 9630245 CPCN_LUNG 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 CPCN_LUNG 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS20 p.K1823E 12 43763164 43763164 CPCN_LUNG 37 Missense_Mutation SNP T C uc010skx.1 Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 CPCN_LUNG 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 CPCN_LUNG 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK2 p.1388_1389FF>F 18 56203253 56203255 CPCN_LUNG 37 In_Frame_Del Del AAG - uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
AURKC 19 57742494 57742507 CPCN_LUNG 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
CARD11 p.Q523E 7 2972172 2972172 CPCN_LUNG 37 Missense_Mutation SNP G C uc003smv.2 Hybrid_Cap... view
CASP8 p.R292P 2 202141587 202141587 CPCN_LUNG 37 Missense_Mutation SNP G C uc002uxt.1 CASP8_uc002uxo.... Hybrid_Cap... view
CDC42BPB p.S1190N 14 103412984 103412984 CPCN_LUNG 37 Missense_Mutation SNP C T uc001ymi.1 CDC42BPB_uc001y... Hybrid_Cap... view
CDKL4 p.C21* 2 39456611 39456611 CPCN_LUNG 37 Nonsense_Mutation SNP G T uc010fal.1 CDKL4_uc002rrm.... Hybrid_Cap... view
CEP110 p.T1891T 9 123929784 123929784 CPCN_LUNG 37 Silent SNP C G uc004bkx.1 CEP110_uc004blb... Hybrid_Cap... view
CHD1 p.P1684del 5 98192165 98192167 CPCN_LUNG 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHIC2 4 54876132 54876132 CPCN_LUNG 37 3'UTR Del C - rs4437313 uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 CPCN_LUNG 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196673 19196674 CPCN_LUNG 37 Intron Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 CPCN_LUNG 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
CSF2 p.P19T 5 131409571 131409571 CPCN_LUNG 37 Missense_Mutation SNP C A uc003kwf.2 Hybrid_Cap... view
CXCL12 10 44873992 44873993 CPCN_LUNG 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DNAH8 6 38952247 38952250 CPCN_LUNG 37 Intron Del CACA - uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
DYRK2 p.S321R 12 68051648 68051648 CPCN_LUNG 37 Missense_Mutation SNP A C uc001str.3 DYRK2_uc001sts.... Hybrid_Cap... view
EDN1 6 12290729 12290729 CPCN_LUNG 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EML4 p.G377A 2 42515374 42515374 CPCN_LUNG 37 Missense_Mutation SNP G C uc002rsi.2 EML4_uc010fap.2... Hybrid_Cap... view
EPHB4 p.E609Q 7 100410762 100410762 CPCN_LUNG 37 Missense_Mutation SNP C G uc003uwn.1 EPHB4_uc003uwm.... Hybrid_Cap... view
ETV1 7 14028708 14028708 CPCN_LUNG 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FANCE p.Q119P 6 35423631 35423631 CPCN_LUNG 37 Missense_Mutation SNP A C uc003oko.1 FANCE_uc010jvw.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 CPCN_LUNG 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 CPCN_LUNG 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 CPCN_LUNG 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 CPCN_LUNG 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GOLGA5 14 93305931 93305932 CPCN_LUNG 37 3'UTR Ins - AA uc001yaz.1 GOLGA5_uc001yba... Hybrid_Cap...
GRIA3 X 122318386 122318387 CPCN_LUNG 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIK1 p.T452N 21 30963442 30963442 CPCN_LUNG 37 Missense_Mutation SNP G T uc011acs.1 GRIK1_uc002ynn.... Hybrid_Cap... view
GUCY2C 12 14827464 14827466 CPCN_LUNG 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HLF p.G78R 17 53345228 53345228 CPCN_LUNG 37 Missense_Mutation SNP G A uc002iug.1 HLF_uc010dce.1_... Hybrid_Cap... view
HNF1A 12 121434630 121434631 CPCN_LUNG 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSPA4 p.F716L 5 132437561 132437561 CPCN_LUNG 37 Missense_Mutation SNP C G uc003kyj.2 Hybrid_Cap... view
ILK 11 6630029 6630029 CPCN_LUNG 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 CPCN_LUNG 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KIAA1549 p.G1857E 7 138524906 138524906 CPCN_LUNG 37 Missense_Mutation SNP C T uc011kql.1 KIAA1549_uc011k... Hybrid_Cap... view
KLK7 19 51480672 51480675 CPCN_LUNG 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LRP1B p.S1408F 2 141625779 141625779 CPCN_LUNG 37 Missense_Mutation SNP G A uc002tvj.1 LRP1B_uc010fnl.... Hybrid_Cap... view
LRP2 p.G118C 2 170163866 170163866 CPCN_LUNG 37 Missense_Mutation SNP C A uc002ues.2 LRP2_uc010zdf.1... Hybrid_Cap... view
MAML2 p.663_664QQ>Q 11 95825204 95825206 CPCN_LUNG 37 In_Frame_Del Del TGC - uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 CPCN_LUNG 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 CPCN_LUNG 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 CPCN_LUNG 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K11 p.N515N 11 65374220 65374220 CPCN_LUNG 37 Silent SNP G A uc001oew.2 MAP3K11_uc001oe... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 CPCN_LUNG 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K7 p.G433* 6 91246115 91246115 CPCN_LUNG 37 Nonsense_Mutation SNP C A uc003pnz.1 MAP3K7_uc003pny... Hybrid_Cap... view
MGA p.N2977T 15 42059210 42059210 CPCN_LUNG 37 Missense_Mutation SNP A C rs61752718 uc010ucy.1 MGA_uc010ucz.1_... Hybrid_Cap... view
MSH3 p.PPA66del 5 79950742 79950750 CPCN_LUNG 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MTMR11 p.G377C 1 149903313 149903313 CPCN_LUNG 37 Missense_Mutation SNP C A uc001etl.3 MTMR11_uc001etm... Hybrid_Cap... view
MYO3A p.R1497Q 10 26482185 26482185 CPCN_LUNG 37 Missense_Mutation SNP G A uc001isn.2 MYO3A_uc009xkp.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 CPCN_LUNG 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CPCN_LUNG 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 20 46282339 46282340 CPCN_LUNG 37 3'UTR Ins - AT uc002xtk.2 NCOA3_uc002xtl.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 CPCN_LUNG 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPM1 5 170837734 170837734 CPCN_LUNG 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 CPCN_LUNG 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 CPCN_LUNG 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP214 9 134067556 134067557 CPCN_LUNG 37 Intron Ins - T rs66652901 uc004cag.2 NUP214_uc004cah... Hybrid_Cap...
PAX3 2 223158653 223158653 CPCN_LUNG 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDK1 p.R363H 2 173451088 173451088 CPCN_LUNG 37 Missense_Mutation SNP G A uc002uhq.1 PDK1_uc010zdz.1... Hybrid_Cap... view
PGR p.H305R 11 100998888 100998888 CPCN_LUNG 37 Missense_Mutation SNP T C uc001pgh.2 PGR_uc001pgi.2_... Hybrid_Cap... view
PIK3C2G p.P129del 12 18435399 18435401 CPCN_LUNG 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIKFYVE p.R176H 2 209142346 209142346 CPCN_LUNG 37 Missense_Mutation SNP G A uc002vcz.2 PIKFYVE_uc010fu... Hybrid_Cap... view
PIP4K2A p.R99L 10 22896899 22896899 CPCN_LUNG 37 Missense_Mutation SNP C A uc001irl.3 Hybrid_Cap... view
PIP4K2C p.E133K 12 57989698 57989698 CPCN_LUNG 37 Missense_Mutation SNP G A uc001sou.2 PIP4K2C_uc001so... Hybrid_Cap... view
PMS2 p.N335S 7 6029571 6029571 CPCN_LUNG 37 Missense_Mutation SNP T C uc003spl.2 PMS2_uc003spj.2... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 CPCN_LUNG 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPRD p.G480A 9 8517952 8517952 CPCN_LUNG 37 Missense_Mutation SNP C G uc003zkk.2 PTPRD_uc003zkp.... Hybrid_Cap... view
RAD51L1 p.M121T 14 68331766 68331766 CPCN_LUNG 37 Missense_Mutation SNP T C uc010aqs.1 RAD51L1_uc010aq... Hybrid_Cap... view
RB1 p.A496fs 13 48954365 48954366 CPCN_LUNG 37 Frame_Shift_Ins Ins - T uc001vcb.2 Hybrid_Cap...
RBPJ p.R238* 4 26426291 26426291 CPCN_LUNG 37 Nonsense_Mutation SNP C T rs5007634 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 CPCN_LUNG 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPGRIP1 14 21785759 21785759 CPCN_LUNG 37 Intron SNP G A uc001wag.2 RPGRIP1_uc001wa... Hybrid_Cap... view
RPS6KL1 14 75373626 75373627 CPCN_LUNG 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SEPT9 17 75494787 75494788 CPCN_LUNG 37 3'UTR Ins - C rs5822173 uc002jts.3 SEPT9_uc010wtk.... Hybrid_Cap...
SLC22A3 p.W294L 6 160831784 160831784 CPCN_LUNG 37 Missense_Mutation SNP G T uc003qti.2 SLC22A3_uc011ef... Hybrid_Cap... view
SLK p.D217N 10 105758938 105758938 CPCN_LUNG 37 Missense_Mutation SNP G A uc001kxo.1 SLK_uc001kxp.1_... Hybrid_Cap... view
SPTAN1 p.R1610fs 9 131374048 131374048 CPCN_LUNG 37 Frame_Shift_Del Del G - uc004bvm.3 SPTAN1_uc004bvl... Hybrid_Cap...
STAT5B p.Q95H 17 40379547 40379547 CPCN_LUNG 37 Missense_Mutation SNP C G uc002hzh.2 STAT5B_uc002hzi... Hybrid_Cap... view
STK31 7 23872024 23872025 CPCN_LUNG 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TFEB p.A149T 6 41658466 41658466 CPCN_LUNG 37 Missense_Mutation SNP C T uc003oqu.1 TFEB_uc003oqs.1... Hybrid_Cap... view
TNN p.E683* 1 175067659 175067659 CPCN_LUNG 37 Nonsense_Mutation SNP G T uc001gkl.1 TNN_uc010pmx.1_... Hybrid_Cap... view
TP53 p.G245V 17 7577547 7577547 CPCN_LUNG 37 Missense_Mutation SNP C A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 CPCN_LUNG 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRRAP p.T640P 7 98508805 98508805 CPCN_LUNG 37 Missense_Mutation SNP A C uc003upp.2 TRRAP_uc011kis.... Hybrid_Cap... view
TTN 2 179391639 179391640 CPCN_LUNG 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN 2 179606055 179606055 CPCN_LUNG 37 Intron SNP C A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
UBE2O p.M382I 17 74396237 74396237 CPCN_LUNG 37 Missense_Mutation SNP C A uc002jrm.3 UBE2O_uc002jrn.... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 CPCN_LUNG 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WDHD1 14 55408116 55408117 CPCN_LUNG 37 3'UTR Del AT - uc001xbm.1 WDHD1_uc010aom.... Hybrid_Cap...
WLS 1 68698123 68698123 CPCN_LUNG 37 De_novo_Start_OutOfFrame SNP G C uc001dee.2 WLS_uc001def.1_... Hybrid_Cap... view