Annotation Summary for Cell Line: Calu-3  

Cell line primary name: Calu-3
Cell line aliases:
Gender: M
Site Primary: lung
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: ATCC
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_A02_474612
SNP arrays: LOBBY_p_NCLE_DNAAffy6_GenomeWideSNP_6_F12_437216
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in Calu-3

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ACACA 17 35766564 35766564 CALU3_LUNG 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM28 8 24211994 24211997 CALU3_LUNG 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS18 p.C725S 16 77355090 77355090 CALU3_LUNG 37 Missense_Mutation SNP A T uc002ffc.3 ADAMTS18_uc010c... Hybrid_Cap... view
AFF3 2 100624064 100624064 CALU3_LUNG 37 Intron SNP G A uc002taf.2 AFF3_uc002tag.2... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 CALU3_LUNG 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 CALU3_LUNG 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 CALU3_LUNG 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 CALU3_LUNG 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
ASTN1 p.F550V 1 176927569 176927569 CALU3_LUNG 37 Missense_Mutation SNP A C uc001glc.2 ASTN1_uc001glb.... Hybrid_Cap... view
AXL p.G835V 19 41765628 41765628 CALU3_LUNG 37 Missense_Mutation SNP G T uc010ehj.2 CYP2F1_uc010xvw... Hybrid_Cap... view
BRCA1 p.V772A 17 41245233 41245233 CALU3_LUNG 37 Missense_Mutation SNP A G rs80357467 uc002ict.2 BRCA1_uc010whp.... Hybrid_Cap... view
BTG1 12 92537706 92537707 CALU3_LUNG 37 3'UTR Ins - T rs33983967 uc001tby.3 BTG1_uc001tbv.1... Hybrid_Cap...
CDK11A p.L531L 1 1635755 1635755 CALU3_LUNG 37 Silent SNP C G uc009vks.2 CDK11B_uc001ags... Hybrid_Cap... view
CDK11B 1 1654066 1654068 CALU3_LUNG 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CDKN1A p.R101L 6 36652078 36652078 CALU3_LUNG 37 Missense_Mutation SNP G T rs45548832 uc011dtq.1 CDKN1A_uc003oml... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 CALU3_LUNG 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 CALU3_LUNG 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
COL1A1 p.N324H 17 48273548 48273548 CALU3_LUNG 37 Missense_Mutation SNP T G uc002iqm.2 Hybrid_Cap... view
CSNK1A1 5 148930660 148930660 CALU3_LUNG 37 5'UTR SNP G C rs11556830 uc003lqw.1 CSNK1A1_uc011dc... Hybrid_Cap... view
DDR2 1 162750211 162750212 CALU3_LUNG 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DNAH8 6 38952246 38952247 CALU3_LUNG 37 Intron Ins - CA rs34819199 uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
EPHA5 p.V712fs 4 66230840 66230840 CALU3_LUNG 37 Frame_Shift_Del Del C - uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap...
ERG p.K396T 21 39755599 39755599 CALU3_LUNG 37 Missense_Mutation SNP T G uc010gnw.2 ERG_uc002yxa.2_... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 CALU3_LUNG 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 CALU3_LUNG 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
GRIA3 X 122318386 122318387 CALU3_LUNG 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 CALU3_LUNG 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 CALU3_LUNG 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 CALU3_LUNG 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HNRNPH1 p.G216S 5 179045215 179045215 CALU3_LUNG 37 Missense_Mutation SNP C T uc003mkf.3 HNRNPH1_uc011dg... Hybrid_Cap... view
ILK 11 6630029 6630029 CALU3_LUNG 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INHBA 7 41729111 41729112 CALU3_LUNG 37 3'UTR Ins - T rs116913029 uc003thq.2 INHBA_uc003thr.... Hybrid_Cap...
INSRR 1 156828443 156828443 CALU3_LUNG 37 5'UTR SNP G T uc010pht.1 NTRK1_uc001fqf.... Hybrid_Cap... view
ITPR2 p.R2033Q 12 26634089 26634089 CALU3_LUNG 37 Missense_Mutation SNP C T uc001rhg.2 ITPR2_uc009zjg.... Hybrid_Cap... view
KIAA2022 p.E117Q X 73964043 73964043 CALU3_LUNG 37 Missense_Mutation SNP C G uc004eby.2 Hybrid_Cap... view
LNX2 p.Q79E 13 28155606 28155606 CALU3_LUNG 37 Missense_Mutation SNP G C uc001url.3 LNX2_uc001urm.1... Hybrid_Cap... view
MAF 16 79628537 79628537 CALU3_LUNG 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 CALU3_LUNG 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 CALU3_LUNG 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 CALU3_LUNG 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPK14 6 36076345 36076354 CALU3_LUNG 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MASTL 10 27475626 27475626 CALU3_LUNG 37 3'UTR SNP A T uc001itm.2 MASTL_uc001itl.... Hybrid_Cap... view
MECOM 3 168862802 168862802 CALU3_LUNG 37 Intron SNP A C uc011bpj.1 MECOM_uc003ffj.... Hybrid_Cap... view
MMP8 p.S373G 11 102585360 102585360 CALU3_LUNG 37 Missense_Mutation SNP T C uc001phe.2 MMP8_uc010rut.1... Hybrid_Cap... view
MMP9 20 44645042 44645042 CALU3_LUNG 37 3'UTR SNP C T uc002xqz.2 Hybrid_Cap... view
MSH6 p.R1334_splice 2 48033792 48033795 CALU3_LUNG 37 Splice_Site_Del Del TAAC - uc002rwd.3 MSH6_uc010fbj.2... Hybrid_Cap...
MYH11 p.H1372H 16 15818525 15818525 CALU3_LUNG 37 Silent SNP G A uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYST3 p.A1890S 8 41790070 41790070 CALU3_LUNG 37 Missense_Mutation SNP C A uc010lxb.2 MYST3_uc010lxc.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 CALU3_LUNG 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CALU3_LUNG 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAPD3 p.H95D 11 134086929 134086929 CALU3_LUNG 37 Missense_Mutation SNP G C uc001qhd.1 NCAPD3_uc010scm... Hybrid_Cap... view
NCOA2 p.R1240S 8 71039244 71039244 CALU3_LUNG 37 Missense_Mutation SNP C A uc003xyn.1 NCOA2_uc011lfb.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 CALU3_LUNG 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NIN p.D406G 14 51237612 51237612 CALU3_LUNG 37 Missense_Mutation SNP T C uc001wyi.2 NIN_uc001wyj.2_... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881822 50881823 CALU3_LUNG 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP214 9 134067556 134067557 CALU3_LUNG 37 Intron Ins - T rs66652901 uc004cag.2 NUP214_uc004cah... Hybrid_Cap...
OXSR1 p.D102H 3 38240224 38240224 CALU3_LUNG 37 Missense_Mutation SNP G C uc003chy.2 OXSR1_uc010hhb.... Hybrid_Cap... view
PAPPA p.D962N 9 119033626 119033626 CALU3_LUNG 37 Missense_Mutation SNP G A uc004bjn.2 PAPPA_uc011lxp.... Hybrid_Cap... view
PAX3 2 223158653 223158653 CALU3_LUNG 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDK4 7 95221928 95221928 CALU3_LUNG 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PML p.C676Y 15 74336727 74336727 CALU3_LUNG 37 Missense_Mutation SNP G A uc002awv.2 PML_uc002awu.2_... Hybrid_Cap... view
PMS1 2 190670539 190670540 CALU3_LUNG 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 CALU3_LUNG 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPRT p.C1288F 20 40727101 40727101 CALU3_LUNG 37 Missense_Mutation SNP C A uc010ggj.2 PTPRT_uc002xkg.... Hybrid_Cap... view
RASGRF1 15 79277150 79277151 CALU3_LUNG 37 Intron Ins - C rs67045840;rs77640668 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 CALU3_LUNG 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KA5 14 91360733 91360734 CALU3_LUNG 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 CALU3_LUNG 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
RPTOR p.C1202_splice 17 78934006 78934006 CALU3_LUNG 37 Splice_Site_SNP SNP G T uc002jyt.1 RPTOR_uc010wug.... Hybrid_Cap... view
SORL1 11 121500393 121500393 CALU3_LUNG 37 3'UTR SNP C A rs76056669 uc001pxx.2 SORL1_uc010rzp.... Hybrid_Cap... view
STK31 7 23872024 23872025 CALU3_LUNG 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TCF21 6 134210497 134210498 CALU3_LUNG 37 5'UTR Ins - TCTC rs35199378 uc003qei.3 TCF21_uc003qej.... Hybrid_Cap...
TGFB2 1 218614750 218614752 CALU3_LUNG 37 3'UTR Del ATG - uc001hln.2 TGFB2_uc001hlm.... Hybrid_Cap...
TGS1 8 56686075 56686075 CALU3_LUNG 37 5'UTR SNP A G uc003xsj.3 TMEM68_uc003xsh... Hybrid_Cap... view
TMEM123 11 102269398 102269398 CALU3_LUNG 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNKS2 10 93622951 93622959 CALU3_LUNG 37 3'UTR Del GTTTT... - rs115539654 uc001khp.2 Hybrid_Cap...
TP53 p.M237I 17 7577570 7577570 CALU3_LUNG 37 Missense_Mutation SNP C A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TTN p.P18231T 2 179454057 179454057 CALU3_LUNG 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
UBR5 p.A1717T 8 103298654 103298654 CALU3_LUNG 37 Missense_Mutation SNP C T uc003ykr.1 UBR5_uc003yks.1... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 CALU3_LUNG 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...