Annotation Summary for Cell Line: Caov-4  

Cell line primary name: Caov-4
Cell line aliases:
Gender: F
Site Primary: ovary
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: ATCC
Expression arrays: BUNDS_p_NCLE_RNA5_HG-U133_Plus_2_B02_419878
SNP arrays: LOBBY_p_NCLE_DNAAffy6_GenomeWideSNP_6_B06_437306
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in Caov-4

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 CAOV4_OVARY 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM28 8 24211994 24211997 CAOV4_OVARY 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AIFM3 p.V418M 22 21331354 21331354 CAOV4_OVARY 37 Missense_Mutation SNP G A uc002ztj.2 AIFM3_uc002ztk.... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 CAOV4_OVARY 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 CAOV4_OVARY 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALS2 2 202587706 202587707 CAOV4_OVARY 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
AURKC 19 57742494 57742507 CAOV4_OVARY 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCL3 19 45262965 45262968 CAOV4_OVARY 37 3'UTR Del CCCC - uc010xxe.1 Hybrid_Cap...
BIRC5 17 76219784 76219785 CAOV4_OVARY 37 3'UTR Ins - AA uc002jvf.2 BIRC5_uc002jvg.... Hybrid_Cap...
CACNB2 10 18828721 18828722 CAOV4_OVARY 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CAMK2A 5 149602223 149602224 CAOV4_OVARY 37 3'UTR Del AC - uc003lrt.2 CAMK2A_uc003lrs... Hybrid_Cap...
CASP4 11 104819546 104819547 CAOV4_OVARY 37 Intron Ins - AGACACAC rs33910737;rs113139978 uc001pid.1 CASP4_uc001pib.... Hybrid_Cap...
CDK11B 1 1654066 1654068 CAOV4_OVARY 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHRNA3 p.Y236C 15 78894277 78894277 CAOV4_OVARY 37 Missense_Mutation SNP T C uc002bec.2 CHRNA3_uc002bea... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 CAOV4_OVARY 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 CAOV4_OVARY 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
CSMD3 p.R395Q 8 113988224 113988224 CAOV4_OVARY 37 Missense_Mutation SNP C T uc003ynu.2 CSMD3_uc003ynt.... Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 CAOV4_OVARY 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CXCL12 10 44873992 44873993 CAOV4_OVARY 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DYRK1A 21 38884966 38884967 CAOV4_OVARY 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EPS15 1 51822219 51822220 CAOV4_OVARY 37 3'UTR Ins - A rs111272942 uc001csq.1 EPS15_uc009vyz.... Hybrid_Cap...
ETV1 7 14028708 14028708 CAOV4_OVARY 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FCRL4 1 157567828 157567828 CAOV4_OVARY 37 5'UTR SNP C T uc001fqw.2 FCRL4_uc010phy.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 CAOV4_OVARY 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 CAOV4_OVARY 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 CAOV4_OVARY 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GLYAT 11 58477791 58477791 CAOV4_OVARY 37 Intron SNP G C uc001nnb.2 GLYAT_uc001nnc.... Hybrid_Cap... view
GMPS p.S378C 3 155633902 155633902 CAOV4_OVARY 37 Missense_Mutation SNP C G uc003faq.2 GMPS_uc011bom.1... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 CAOV4_OVARY 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 CAOV4_OVARY 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 CAOV4_OVARY 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 CAOV4_OVARY 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 CAOV4_OVARY 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 CAOV4_OVARY 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 CAOV4_OVARY 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 CAOV4_OVARY 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LIFR p.A985S 5 38482038 38482038 CAOV4_OVARY 37 Missense_Mutation SNP C A uc010ive.1 LIFR_uc003jli.2... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 CAOV4_OVARY 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 CAOV4_OVARY 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MARK3 p.S734L 14 103969503 103969503 CAOV4_OVARY 37 Missense_Mutation SNP C T uc001ymz.3 MARK3_uc001ymx.... Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 CAOV4_OVARY 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MYH10 p.G1125D 17 8409648 8409648 CAOV4_OVARY 37 Missense_Mutation SNP C T uc002glm.2 MYH10_uc002gll.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 CAOV4_OVARY 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 CAOV4_OVARY 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NDE1 16 15818394 15818394 CAOV4_OVARY 37 3'UTR SNP G A uc010uzy.1 MYH11_uc002ddv.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 CAOV4_OVARY 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61921185 61921186 CAOV4_OVARY 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NPM1 5 170837734 170837734 CAOV4_OVARY 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 CAOV4_OVARY 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
OBSCN p.D1018G 1 228431007 228431007 CAOV4_OVARY 37 Missense_Mutation SNP A G uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap... view
PAX3 2 223158653 223158653 CAOV4_OVARY 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX5 9 37034095 37034095 CAOV4_OVARY 37 5'UTR Del C - uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 CAOV4_OVARY 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3C2G 12 18800990 18800990 CAOV4_OVARY 37 3'UTR Del A - rs16914368 uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PRKAA2 p.A191V 1 57161616 57161616 CAOV4_OVARY 37 Missense_Mutation SNP C T uc001cyk.3 Hybrid_Cap... view
PRKD3 2 37496478 37496478 CAOV4_OVARY 37 Intron Del C - uc002rqd.2 PRKD3_uc002rqe.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 CAOV4_OVARY 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAF1 p.A42I 3 12660096 12660097 CAOV4_OVARY 37 Missense_Mutation DNP GC AT rs11549992 uc003bxf.3 RAF1_uc011auu.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 CAOV4_OVARY 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KL1 14 75373626 75373627 CAOV4_OVARY 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SLC6A8 X 152957656 152957657 CAOV4_OVARY 37 Intron Ins - A uc004fib.3 SLC6A8_uc004fic... Hybrid_Cap...
STK24 p.E233K 13 99118752 99118752 CAOV4_OVARY 37 Missense_Mutation SNP C T uc001vnm.1 STK24_uc001vnn.... Hybrid_Cap... view
STK39 2 168811951 168811951 CAOV4_OVARY 37 3'UTR SNP G A uc002uea.2 Hybrid_Cap... view
THBS3 1 155174376 155174377 CAOV4_OVARY 37 Intron Ins - A uc001fix.2 RAG1AP1_uc010pe... Hybrid_Cap...
TIE1 p.I854S 1 43783021 43783021 CAOV4_OVARY 37 Missense_Mutation SNP T G uc001ciu.2 TIE1_uc010oke.1... Hybrid_Cap... view
TLK1 2 171850178 171850179 CAOV4_OVARY 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TMEM123 11 102269398 102269398 CAOV4_OVARY 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TOP2A p.S1392* 17 38547850 38547850 CAOV4_OVARY 37 Nonsense_Mutation SNP G C uc002huq.2 Hybrid_Cap... view
TOX3 p.R147W 16 52484428 52484428 CAOV4_OVARY 37 Missense_Mutation SNP G A uc010vgu.1 TOX3_uc002egw.2... Hybrid_Cap... view
TP53 p.V147D 17 7578490 7578490 CAOV4_OVARY 37 Missense_Mutation SNP A T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 CAOV4_OVARY 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPM8 p.E402D 2 234862626 234862626 CAOV4_OVARY 37 Missense_Mutation SNP A C uc002vvh.2 TRPM8_uc010fyj.... Hybrid_Cap... view
TTBK1 p.E771del 6 43250726 43250728 CAOV4_OVARY 37 In_Frame_Del Del GAA - uc003ouq.1 Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 CAOV4_OVARY 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...