Annotation Summary for Cell Line: DEL  

Cell line primary name: DEL
Cell line aliases:
Gender: M
Site Primary: haematopoietic_and_lymphoid_tissue
Histology: lymphoid_neoplasm
Hist Subtype1: NS
Notes:
Source: DSMZ
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_C01_474756
SNP arrays: CHARY_p_NCLE_DNAAffy9_GenomeWideSNP_6_C07_490506
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in DEL

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ALPK2 p.EDTST1006del 18 56204388 56204402 DEL_HAEMATOPOIE... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
BCR 22 23658000 23658000 DEL_HAEMATOPOIE... 37 3'UTR SNP G A uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap... view
CDK13 p.P1447L 7 40134380 40134380 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc003thh.3 CDK13_uc003thi.... Hybrid_Cap... view
CHD1 p.P1684del 5 98192165 98192167 DEL_HAEMATOPOIE... 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CREBBP p.E1630_splice 16 3781773 3781784 DEL_HAEMATOPOIE... 37 Splice_Site_Del Del CTACC... - uc002cvv.2 CREBBP_uc002cvw... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 DEL_HAEMATOPOIE... 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
DLC1 p.C1280Y 8 12948843 12948843 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc003wwm.2 DLC1_uc003wwk.1... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 DEL_HAEMATOPOIE... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
GPHN 14 67390992 67390992 DEL_HAEMATOPOIE... 37 Intron SNP C A uc010tss.1 GPHN_uc001xiw.2... Hybrid_Cap... view
ILK p.P353L 11 6631246 6631246 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 DEL_HAEMATOPOIE... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LEMD1 p.K37fs 1 205388453 205388453 DEL_HAEMATOPOIE... 37 Frame_Shift_Del Del T - uc001hci.1 LEMD1_uc001hcj.... Hybrid_Cap...
LRP1B p.S3591Y 2 141128851 141128851 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP G T uc002tvj.1 Hybrid_Cap... view
LRP2 p.V1948M 2 170070365 170070365 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C T rs41268689 uc002ues.2 Hybrid_Cap... view
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 DEL_HAEMATOPOIE... 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 DEL_HAEMATOPOIE... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP4K4 2 102507762 102507762 DEL_HAEMATOPOIE... 37 3'UTR SNP G T uc002tbc.2 MAP4K4_uc002tbd... Hybrid_Cap... view
MYH1 p.I460T 17 10415193 10415193 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP A G uc002gmo.2 Hybrid_Cap... view
MYO3B p.A712E 2 171259363 171259363 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C A uc002ufy.2 MYO3B_uc002ufv.... Hybrid_Cap... view
NCAM1 11 112832340 112832340 DEL_HAEMATOPOIE... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279864 46279866 DEL_HAEMATOPOIE... 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEDD9 p.D628Y 6 11190220 11190220 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C A uc003mzv.2 NEDD9_uc010joz.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 DEL_HAEMATOPOIE... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
PDE4DIP p.Q1665fs 1 144873963 144873963 DEL_HAEMATOPOIE... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 DEL_HAEMATOPOIE... 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PRKG1 p.N623I 10 54048726 54048726 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP A T uc001jjo.2 PRKG1_uc001jjm.... Hybrid_Cap... view
PSIP1 9 15471232 15471232 DEL_HAEMATOPOIE... 37 Intron SNP G T uc003zlv.3 PSIP1_uc003zlw.... Hybrid_Cap... view
RAC1 p.V104M 7 6439784 6439784 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc003spw.2 RAC1_uc003spx.2... Hybrid_Cap... view
RAC1 p.A107E 7 6439794 6439794 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C A uc003spw.2 RAC1_uc003spx.2... Hybrid_Cap... view
ROR1 p.H570Q 1 64643434 64643434 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP C G uc001dbj.2 Hybrid_Cap... view
TGS1 p.L99F 8 56698408 56698408 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP G T uc003xsj.3 TGS1_uc010lyh.2... Hybrid_Cap... view
TNFRSF11B p.Q243H 8 119938821 119938821 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP T A uc003yon.3 TNFRSF11B_uc010... Hybrid_Cap... view
TP53 p.S215C 17 7578206 7578206 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP T A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TPR p.Q2051E 1 186292964 186292964 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP G C uc001grv.2 Hybrid_Cap... view
TTN p.F24187L 2 179430594 179430594 DEL_HAEMATOPOIE... 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view