Annotation Summary for Cell Line: ECC12  

Cell line primary name: ECC12
Cell line aliases:
Gender:
Site Primary: stomach
Histology: carcinoma
Hist Subtype1: small_cell_adenocarcinoma
Notes:
Source: RIKEN
Expression arrays: BITTS_p_NCLE_RNA12_HG-U133_Plus_2_G10_698876
SNP arrays: QUAFF_p_NCLE_DNAAffy12_GenomeWideSNP_6_E04_592716
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in ECC12

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 ECC12_STOMACH 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM28 8 24211994 24211997 ECC12_STOMACH 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS20 p.S979C 12 43826267 43826267 ECC12_STOMACH 37 Missense_Mutation SNP G C uc010skx.1 ADAMTS20_uc001r... Hybrid_Cap... view
ADCK4 19 41206407 41206407 ECC12_STOMACH 37 Intron SNP C T uc002oor.2 ADCK4_uc002oop.... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 ECC12_STOMACH 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 4 113347105 113347105 ECC12_STOMACH 37 Intron SNP G A uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap... view
ALPK1 4 113347609 113347610 ECC12_STOMACH 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 ECC12_STOMACH 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
AURKC 19 57742494 57742507 ECC12_STOMACH 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCL11A 2 60687401 60687404 ECC12_STOMACH 37 3'UTR Del TGTT - uc002sae.1 BCL11A_uc002sab... Hybrid_Cap...
CCDC6 p.S464L 10 61552709 61552709 ECC12_STOMACH 37 Missense_Mutation SNP G A uc001jks.3 Hybrid_Cap... view
CDK11B 1 1654066 1654068 ECC12_STOMACH 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CEP110 9 123912784 123912784 ECC12_STOMACH 37 Intron SNP C T uc004bkx.1 CEP110_uc004bky... Hybrid_Cap... view
CEP110 p.P2215fs 9 123935748 123935748 ECC12_STOMACH 37 Frame_Shift_Del Del T - uc004bkx.1 CEP110_uc004blb... Hybrid_Cap...
CHRNA5 15 78885615 78885616 ECC12_STOMACH 37 3'UTR Ins - TA rs72534078 uc002bdy.2 CHRNA3_uc002bea... Hybrid_Cap...
CLK2 p.L309I 1 155235659 155235659 ECC12_STOMACH 37 Missense_Mutation SNP G T uc001fjy.2 RAG1AP1_uc010pe... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 ECC12_STOMACH 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
COL1A1 p.P739L 17 48268763 48268763 ECC12_STOMACH 37 Missense_Mutation SNP G A uc002iqm.2 Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 ECC12_STOMACH 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSMD3 p.S256R 8 114111134 114111134 ECC12_STOMACH 37 Missense_Mutation SNP A T uc003ynu.2 CSMD3_uc003ynt.... Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 ECC12_STOMACH 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CYFIP1 p.A1025V 15 22997828 22997828 ECC12_STOMACH 37 Missense_Mutation SNP C T uc001yus.2 CYFIP1_uc001yut... Hybrid_Cap... view
DDR2 1 162750211 162750212 ECC12_STOMACH 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DLL1 p.P385T 6 170594103 170594103 ECC12_STOMACH 37 Missense_Mutation SNP G T uc003qxm.2 Hybrid_Cap... view
DOCK3 p.T200I 3 51127668 51127668 ECC12_STOMACH 37 Missense_Mutation SNP C T uc011bds.1 Hybrid_Cap... view
DST p.R1461W 6 56492955 56492955 ECC12_STOMACH 37 Missense_Mutation SNP G A uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
DYRK1A 21 38884966 38884967 ECC12_STOMACH 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EPHA6 3 97367230 97367231 ECC12_STOMACH 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB3 p.A602V 3 184297268 184297268 ECC12_STOMACH 37 Missense_Mutation SNP C T uc003foz.2 Hybrid_Cap... view
FANCA p.T1279K 16 89806500 89806500 ECC12_STOMACH 37 Missense_Mutation SNP G T uc002fou.1 ZNF276_uc010ciq... Hybrid_Cap... view
FANCI p.D876G 15 89838316 89838316 ECC12_STOMACH 37 Missense_Mutation SNP A G uc010bnp.1 FANCI_uc002bnm.... Hybrid_Cap... view
FGFR1 p.V358I 8 38279324 38279324 ECC12_STOMACH 37 Missense_Mutation SNP C T uc003xlp.2 FGFR1_uc011lbo.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 ECC12_STOMACH 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLT4 5 180035183 180035185 ECC12_STOMACH 37 Intron Del AGT - uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap...
FN1 2 216244182 216244185 ECC12_STOMACH 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FOXP1 3 71008341 71008342 ECC12_STOMACH 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GLYATL2 p.K277N 11 58601956 58601956 ECC12_STOMACH 37 Missense_Mutation SNP C G uc001nnd.3 GLYATL2_uc009ym... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 ECC12_STOMACH 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRB2 17 73389806 73389806 ECC12_STOMACH 37 5'UTR SNP T C uc002jnx.3 GRB2_uc002jny.3... Hybrid_Cap... view
GRIA3 X 122318386 122318387 ECC12_STOMACH 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 ECC12_STOMACH 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HAPLN1 5 82937252 82937252 ECC12_STOMACH 37 3'UTR Del A - uc003kim.2 HAPLN1_uc003kin... Hybrid_Cap...
HGF p.D543Y 7 81335733 81335733 ECC12_STOMACH 37 Missense_Mutation SNP C A uc003uhl.2 HGF_uc003uhm.2_... Hybrid_Cap... view
HIPK1 p.T1113M 1 114515839 114515839 ECC12_STOMACH 37 Missense_Mutation SNP C T uc001eem.2 HIPK1_uc001een.... Hybrid_Cap... view
HIPK3 p.Y182C 11 33308505 33308505 ECC12_STOMACH 37 Missense_Mutation SNP A G uc001mul.1 HIPK3_uc001mum.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 ECC12_STOMACH 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSF1 8 145538019 145538019 ECC12_STOMACH 37 3'UTR SNP G A uc003zbt.3 HSF1_uc003zbu.3... Hybrid_Cap... view
ILK 11 6630029 6630029 ECC12_STOMACH 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 ECC12_STOMACH 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LATS2 13 21620222 21620223 ECC12_STOMACH 37 5'UTR Ins - A rs61240127;rs115723063 uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 ECC12_STOMACH 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 ECC12_STOMACH 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K5 6 136878752 136878752 ECC12_STOMACH 37 3'UTR Del T - rs79903899 uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MAP4K5 14 50886524 50886524 ECC12_STOMACH 37 3'UTR SNP G T uc001wya.2 MAP4K5_uc001wyb... Hybrid_Cap... view
MAP4K5 p.T42I 14 50971559 50971559 ECC12_STOMACH 37 Missense_Mutation SNP G A uc001wya.2 MAP4K5_uc001wyb... Hybrid_Cap... view
MCL1 1 150549737 150549744 ECC12_STOMACH 37 3'UTR Del GCTAG... - rs116997851 uc001euz.2 MCL1_uc010pch.1... Hybrid_Cap...
MCM3APAS 21 47671275 47671276 ECC12_STOMACH 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MET p.P1009S 7 116411986 116411986 ECC12_STOMACH 37 Missense_Mutation SNP C T uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 ECC12_STOMACH 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MSN p.V33M X 64947676 64947676 ECC12_STOMACH 37 Missense_Mutation SNP G A uc004dwf.2 MSN_uc010nkp.1_... Hybrid_Cap... view
MYLK 3 123332876 123332876 ECC12_STOMACH 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
MYLK p.E1066del 3 123419117 123419119 ECC12_STOMACH 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
MYT1 p.R724H 20 62851265 62851265 ECC12_STOMACH 37 Missense_Mutation SNP G A uc002yii.2 MYT1_uc002yih.2... Hybrid_Cap... view
NCAM1 11 112832307 112832308 ECC12_STOMACH 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 ECC12_STOMACH 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFKBIA 14 35871136 35871138 ECC12_STOMACH 37 3'UTR Del TTC - rs112369437 uc001wtf.3 NFKBIA_uc001wte... Hybrid_Cap...
NOS2 p.G649W 17 26096092 26096092 ECC12_STOMACH 37 Missense_Mutation SNP C A uc002gzu.2 NOS2_uc010wab.1... Hybrid_Cap... view
NPM1 5 170837734 170837734 ECC12_STOMACH 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 ECC12_STOMACH 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 ECC12_STOMACH 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUMA1 p.T636I 11 71726642 71726642 ECC12_STOMACH 37 Missense_Mutation SNP G A uc001orl.1 NUMA1_uc009ysw.... Hybrid_Cap... view
NUP153 p.S192F 6 17675761 17675761 ECC12_STOMACH 37 Missense_Mutation SNP G A uc011dje.1 NUP153_uc003ncd... Hybrid_Cap... view
ORMDL3 p.A29S 17 38080372 38080373 ECC12_STOMACH 37 Missense_Mutation DNP CC AA uc002htj.1 ORMDL3_uc002hti... Hybrid_Cap...
PAX3 2 223066017 223066018 ECC12_STOMACH 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 ECC12_STOMACH 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX5 9 37034102 37034102 ECC12_STOMACH 37 5'UTR SNP T C uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap... view
PGR 11 100933598 100933599 ECC12_STOMACH 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 ECC12_STOMACH 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PKHD1 p.R2891C 6 51619708 51619708 ECC12_STOMACH 37 Missense_Mutation SNP G A uc003pah.1 PKHD1_uc010jzn.... Hybrid_Cap... view
PMS1 2 190670539 190670540 ECC12_STOMACH 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKCA 17 64298959 64298960 ECC12_STOMACH 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 ECC12_STOMACH 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG1 10 52751088 52751089 ECC12_STOMACH 37 5'UTR Ins - GCT rs67900156;rs71029335 uc001jjm.2 PRKG1_uc010qhp.... Hybrid_Cap...
PTK2B p.V760I 8 27303374 27303374 ECC12_STOMACH 37 Missense_Mutation SNP G A uc003xfn.1 PTK2B_uc003xfo.... Hybrid_Cap... view
RABEP1 17 5241556 5241556 ECC12_STOMACH 37 Intron SNP T G uc002gbm.3 RABEP1_uc010clc... Hybrid_Cap... view
RBPJ 4 26431822 26431822 ECC12_STOMACH 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 ECC12_STOMACH 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RICTOR p.L1561R 5 38945616 38945616 ECC12_STOMACH 37 Missense_Mutation SNP A C uc003jlo.2 RICTOR_uc003jlp... Hybrid_Cap... view
ROBO2 3 77666937 77666937 ECC12_STOMACH 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
ROR1 p.A923T 1 64644491 64644491 ECC12_STOMACH 37 Missense_Mutation SNP G A uc001dbj.2 Hybrid_Cap... view
STAT6 p.C796R 12 57490748 57490748 ECC12_STOMACH 37 Missense_Mutation SNP A G uc009zpg.2 STAT6_uc009zpe.... Hybrid_Cap... view
STK25 2 242435659 242435662 ECC12_STOMACH 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 ECC12_STOMACH 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STRADA 17 61781331 61781332 ECC12_STOMACH 37 Intron Ins - AGAACC rs66701913 uc002jbm.2 STRADA_uc002jbn... Hybrid_Cap...
TGFB2 1 218519928 218519929 ECC12_STOMACH 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TLR4 9 120466685 120466685 ECC12_STOMACH 37 5'UTR SNP G C uc004bjz.2 TLR4_uc004bka.2... Hybrid_Cap... view
TMEM123 11 102269398 102269398 ECC12_STOMACH 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP53 p.V216M 17 7578203 7578203 ECC12_STOMACH 37 Missense_Mutation SNP C T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP53BP1 p.R1583T 15 43708548 43708548 ECC12_STOMACH 37 Missense_Mutation SNP C G uc001zrr.3 TP53BP1_uc010ud... Hybrid_Cap... view
TP63 3 189507518 189507519 ECC12_STOMACH 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 ECC12_STOMACH 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSC2 p.Y857C 16 2125824 2125824 ECC12_STOMACH 37 Missense_Mutation SNP A G uc002con.2 TSC2_uc010bsd.2... Hybrid_Cap... view
UBR5 p.A2639T 8 103273415 103273415 ECC12_STOMACH 37 Missense_Mutation SNP C T uc003ykr.1 UBR5_uc003yks.1... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 ECC12_STOMACH 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
XIAP p.E350del X 123025155 123025157 ECC12_STOMACH 37 In_Frame_Del Del GAG - uc010nqu.2 XIAP_uc004etx.2... Hybrid_Cap...
YSK4 p.C459Y 2 135745066 135745066 ECC12_STOMACH 37 Missense_Mutation SNP C T uc002tue.1 YSK4_uc002tuf.1... Hybrid_Cap... view