Annotation Summary for Cell Line: EFO-21  

Cell line primary name: EFO-21
Cell line aliases:
Gender: F
Site Primary: ovary
Histology: carcinoma
Hist Subtype1: serous_carcinoma
Notes:
Source: DSMZ
Expression arrays: PARES_p_NCLE_RNA_Redo_HG-U133_Plus_2_A12_257620
SNP arrays: LIMPS_p_NCLE_DNA2N_GenomeWideSNP_6_F04_246736
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in EFO-21

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 EFO21_OVARY 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM28 8 24211994 24211997 EFO21_OVARY 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
CCR1 p.F89L 3 46245538 46245538 EFO21_OVARY 37 Missense_Mutation SNP G T uc003cph.1 CCR3_uc003cpg.1... Hybrid_Cap... view
CCR6 6 167417312 167417313 EFO21_OVARY 37 5'UTR Ins - T uc003qvl.2 FGFR1OP_uc011eg... Hybrid_Cap...
CDK11B 1 1654066 1654068 EFO21_OVARY 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CDK20 p.R218C 9 90584746 90584746 EFO21_OVARY 37 Missense_Mutation SNP G A uc004apr.2 CDK20_uc004aps.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 EFO21_OVARY 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 EFO21_OVARY 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
DACH1 13 72014625 72014626 EFO21_OVARY 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
EIF4E 4 99808137 99808141 EFO21_OVARY 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
FANCD2 3 10081795 10081795 EFO21_OVARY 37 Intron SNP T C uc003buw.2 FANCD2_uc003bux... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 EFO21_OVARY 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 EFO21_OVARY 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNA p.R1633H X 153585849 153585849 EFO21_OVARY 37 Missense_Mutation SNP C T uc004fkk.2 FLNA_uc011mzn.1... Hybrid_Cap... view
FSCB p.P335T 14 44975188 44975188 EFO21_OVARY 37 Missense_Mutation SNP G T uc001wvn.2 Hybrid_Cap... view
GPHN p.E62Q 14 67243222 67243222 EFO21_OVARY 37 Missense_Mutation SNP G C uc010tss.1 GPHN_uc001xiw.2... Hybrid_Cap... view
GUCY2C p.M701R 12 14792851 14792851 EFO21_OVARY 37 Missense_Mutation SNP A C uc001rcd.2 Hybrid_Cap... view
GUCY2C 12 14827464 14827466 EFO21_OVARY 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 EFO21_OVARY 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
IL21R p.V183D 16 27455903 27455903 EFO21_OVARY 37 Missense_Mutation SNP T A uc002doq.1 IL21R_uc002dor.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 EFO21_OVARY 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LIFR p.D16N 5 38530704 38530704 EFO21_OVARY 37 Missense_Mutation SNP C T rs61751713 uc010ive.1 LIFR_uc003jli.2... Hybrid_Cap... view
MAF 16 79628537 79628537 EFO21_OVARY 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML2 p.I1058M 11 95712409 95712409 EFO21_OVARY 37 Missense_Mutation SNP A C uc001pfw.1 Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 EFO21_OVARY 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 EFO21_OVARY 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MYH11 p.R676C 16 15844048 15844048 EFO21_OVARY 37 Missense_Mutation SNP G A rs111404182 uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 EFO21_OVARY 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279864 46279866 EFO21_OVARY 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 EFO21_OVARY 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NKD2 p.E120del 5 1034373 1034375 EFO21_OVARY 37 In_Frame_Del Del GGA - uc003jbt.1 NKD2_uc010itf.1... Hybrid_Cap...
NUMA1 p.Q1550_splice 11 71723446 71723448 EFO21_OVARY 37 Splice_Site_Del Del CCT - uc001orl.1 NUMA1_uc009ysw.... Hybrid_Cap...
PCDH15 p.P1759del 10 55582230 55582232 EFO21_OVARY 37 In_Frame_Del Del AGG - uc010qhy.1 PCDH15_uc010qhq... Hybrid_Cap...
PCNA 20 5095889 5095889 EFO21_OVARY 37 3'UTR SNP T A uc002wlp.2 C20orf30_uc010g... Hybrid_Cap... view
PDE4DIP p.Q1665fs 1 144873963 144873963 EFO21_OVARY 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 EFO21_OVARY 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PKHD1 p.S2998L 6 51613421 51613421 EFO21_OVARY 37 Missense_Mutation SNP G A uc003pah.1 PKHD1_uc010jzn.... Hybrid_Cap... view
PRKACB p.D289N 1 84668447 84668447 EFO21_OVARY 37 Missense_Mutation SNP G A uc001djl.2 PRKACB_uc001djj... Hybrid_Cap... view
PRKD2 p.E621Q 19 47192904 47192904 EFO21_OVARY 37 Missense_Mutation SNP C G uc010xye.1 PRKD2_uc002pfd.... Hybrid_Cap... view
PTPRU p.I1165S 1 29642614 29642614 EFO21_OVARY 37 Missense_Mutation SNP T G uc001bru.2 PTPRU_uc001brv.... Hybrid_Cap... view
RELA p.D254Y 11 65425908 65425908 EFO21_OVARY 37 Missense_Mutation SNP C A uc010ron.1 RELA_uc001ofg.2... Hybrid_Cap... view
RPS6KB1 17 58024224 58024225 EFO21_OVARY 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 EFO21_OVARY 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SNX19 p.T231I 11 130785143 130785143 EFO21_OVARY 37 Missense_Mutation SNP G A uc001qgk.3 SNX19_uc010sce.... Hybrid_Cap... view
STK31 7 23872024 23872025 EFO21_OVARY 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TCF21 6 134210497 134210498 EFO21_OVARY 37 5'UTR Ins - TCTC rs35199378 uc003qei.3 TCF21_uc003qej.... Hybrid_Cap...
TEC 4 48139307 48139310 EFO21_OVARY 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TPR p.L767F 1 186322853 186322853 EFO21_OVARY 37 Missense_Mutation SNP C G uc001grv.2 Hybrid_Cap... view
TRPS1 8 116635872 116635873 EFO21_OVARY 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSC1 p.H894Y 9 135772943 135772943 EFO21_OVARY 37 Missense_Mutation SNP G A uc004cca.2 TSC1_uc004ccb.3... Hybrid_Cap... view
TTN p.R31678H 2 179398605 179398605 EFO21_OVARY 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.D22564H 2 179435465 179435465 EFO21_OVARY 37 Missense_Mutation SNP C G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.L13415M 2 179481669 179481669 EFO21_OVARY 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.E9135K 2 179560664 179560664 EFO21_OVARY 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 EFO21_OVARY 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WRN p.R1191S 8 31007857 31007857 EFO21_OVARY 37 Missense_Mutation SNP A T uc003xio.3 WRN_uc010lvk.2_... Hybrid_Cap... view
YWHAH p.Y183* 22 32352587 32352587 EFO21_OVARY 37 Nonsense_Mutation SNP C G uc003alz.2 YWHAH_uc010gwl.... Hybrid_Cap... view
ZNF276 16 89806642 89806642 EFO21_OVARY 37 3'UTR SNP C T uc002fos.3 ZNF276_uc010ciq... Hybrid_Cap... view
ZNF423 p.D1260N 16 49557582 49557582 EFO21_OVARY 37 Missense_Mutation SNP C T uc002efs.2 ZNF423_uc010vgn... Hybrid_Cap... view