Annotation Summary for Cell Line: G-402  

Cell line primary name: G-402
Cell line aliases:
Gender: F
Site Primary: soft_tissue
Histology: rhabdoid_tumour
Hist Subtype1: NS
Notes:
Source: ATCC
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_G06_296144
SNP arrays: FASTS_p_NCLE_DNAAffy4_S_GenomeWideSNP_6_E02_335286
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in G-402

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ACACA 17 35766564 35766564 G402_SOFT_TISSU... 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM17 2 9630245 9630245 G402_SOFT_TISSU... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 G402_SOFT_TISSU... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 p.S388L 14 78392261 78392261 G402_SOFT_TISSU... 37 Missense_Mutation SNP C T uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap... view
AFF1 p.R546W 4 88035621 88035621 G402_SOFT_TISSU... 37 Missense_Mutation SNP C T uc011ccz.1 AFF1_uc003hqj.3... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 G402_SOFT_TISSU... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 G402_SOFT_TISSU... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 G402_SOFT_TISSU... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
BCR 22 23632777 23632778 G402_SOFT_TISSU... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BTG1 12 92537706 92537707 G402_SOFT_TISSU... 37 3'UTR Ins - T rs33983967 uc001tby.3 BTG1_uc001tbv.1... Hybrid_Cap...
CEP110 9 123939699 123939699 G402_SOFT_TISSU... 37 3'UTR Del T - rs75910820 uc004bkx.1 CEP110_uc004blb... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 G402_SOFT_TISSU... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 G402_SOFT_TISSU... 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSF1R 5 149433400 149433401 G402_SOFT_TISSU... 37 3'UTR Ins - C rs66970099;rs78449650 uc003lrl.2 CSF1R_uc011dcd.... Hybrid_Cap...
CSMD3 p.P1143A 8 113651024 113651024 G402_SOFT_TISSU... 37 Missense_Mutation SNP G C uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CTNNB1 3 41275601 41275601 G402_SOFT_TISSU... 37 Intron SNP G A uc010hia.1 CTNNB1_uc003ckp... Hybrid_Cap... view
CTSL2 9 99799961 99799961 G402_SOFT_TISSU... 37 Intron SNP G A rs57778648 uc004awt.2 CTSL2_uc010msi.... Hybrid_Cap... view
CUBN p.V2865M 10 16941000 16941000 G402_SOFT_TISSU... 37 Missense_Mutation SNP C T uc001ioo.2 CUBN_uc009xjq.1... Hybrid_Cap... view
CXCL12 10 44873992 44873993 G402_SOFT_TISSU... 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
CYP1B1 2 38297654 38297655 G402_SOFT_TISSU... 37 3'UTR Ins - A rs9341258 uc002rqo.2 Hybrid_Cap...
DGKB 7 14216345 14216346 G402_SOFT_TISSU... 37 Intron Ins - AGACT uc003ssz.2 DGKB_uc011jxt.1... Hybrid_Cap...
DYRK1A 21 38884966 38884967 G402_SOFT_TISSU... 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
DYRK4 p.A153V 12 4700459 4700459 G402_SOFT_TISSU... 37 Missense_Mutation SNP C T uc009zeh.1 DYRK4_uc001qmx.... Hybrid_Cap... view
EPHA5 4 66189753 66189754 G402_SOFT_TISSU... 37 3'UTR Ins - T rs67487372 uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap...
EPHA6 3 97367230 97367231 G402_SOFT_TISSU... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 G402_SOFT_TISSU... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 G402_SOFT_TISSU... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 G402_SOFT_TISSU... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 G402_SOFT_TISSU... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 G402_SOFT_TISSU... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 G402_SOFT_TISSU... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 G402_SOFT_TISSU... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY1A2 p.V653L 11 106579365 106579365 G402_SOFT_TISSU... 37 Missense_Mutation SNP C G uc009yxn.1 GUCY1A2_uc001pj... Hybrid_Cap... view
GUCY2C 12 14827464 14827466 G402_SOFT_TISSU... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
GUCY2C p.P252L 12 14832666 14832666 G402_SOFT_TISSU... 37 Missense_Mutation SNP G A uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap... view
HIF1A 14 62213929 62213930 G402_SOFT_TISSU... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HSP90B1 12 104341645 104341648 G402_SOFT_TISSU... 37 3'UTR Del ACTG - rs2307842 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 G402_SOFT_TISSU... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
KSR2 12 117904828 117904828 G402_SOFT_TISSU... 37 3'UTR SNP G C uc001two.2 Hybrid_Cap... view
LTK 15 41806006 41806006 G402_SOFT_TISSU... 37 5'UTR SNP A G uc001zoa.3 LTK_uc001zob.3_... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 G402_SOFT_TISSU... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K6 17 67516340 67516341 G402_SOFT_TISSU... 37 Intron Ins - T uc002jij.2 MAP2K6_uc002jii... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 G402_SOFT_TISSU... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 G402_SOFT_TISSU... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAST2 p.S404* 1 46485290 46485290 G402_SOFT_TISSU... 37 Nonsense_Mutation SNP C G uc001cov.2 MAST2_uc001cow.... Hybrid_Cap... view
MCM3APAS 21 47671275 47671276 G402_SOFT_TISSU... 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MLLT3 p.156_157SS>S 9 20414374 20414376 G402_SOFT_TISSU... 37 In_Frame_Del Del CTA - rs1761445 uc003zoe.2 MLLT3_uc011lne.... Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 G402_SOFT_TISSU... 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MSI2 17 55709355 55709355 G402_SOFT_TISSU... 37 Intron SNP C T rs111371751 uc002iuz.1 MSI2_uc010wnm.1... Hybrid_Cap... view
NCAM1 11 112832307 112832308 G402_SOFT_TISSU... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 G402_SOFT_TISSU... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.QQQ1272del 20 46279815 46279823 G402_SOFT_TISSU... 37 In_Frame_Del Del GCAGC... - uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 G402_SOFT_TISSU... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NF1 p.P1358S 17 29576099 29576099 G402_SOFT_TISSU... 37 Missense_Mutation SNP C T uc002hgg.2 NF1_uc002hgh.2_... Hybrid_Cap... view
NLK p.P40R 17 26370018 26370018 G402_SOFT_TISSU... 37 Missense_Mutation SNP C G uc010crj.2 NLK_uc010cri.1_... Hybrid_Cap... view
NPM1 5 170837734 170837734 G402_SOFT_TISSU... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 G402_SOFT_TISSU... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 G402_SOFT_TISSU... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 G402_SOFT_TISSU... 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP214 9 134067556 134067557 G402_SOFT_TISSU... 37 Intron Ins - T rs66652901 uc004cag.2 NUP214_uc004cah... Hybrid_Cap...
PAX3 2 223065753 223065754 G402_SOFT_TISSU... 37 3'UTR Ins - AC rs72163163 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDGFRA 4 55131002 55131002 G402_SOFT_TISSU... 37 Intron Del A - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PDPK1 16 2647842 2647842 G402_SOFT_TISSU... 37 3'UTR SNP C T uc002cqs.2 PDPK1_uc002cqt.... Hybrid_Cap... view
PIK3C2A 11 17111198 17111199 G402_SOFT_TISSU... 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIP5K1B p.S336R 9 71534419 71534419 G402_SOFT_TISSU... 37 Missense_Mutation SNP C A uc004agu.2 PIP5K1B_uc011lr... Hybrid_Cap... view
PNCK X 152937279 152937282 G402_SOFT_TISSU... 37 Intron Del AGGC - uc011myu.1 PNCK_uc011myt.1... Hybrid_Cap...
PPM1E p.H181Y 17 57033086 57033086 G402_SOFT_TISSU... 37 Missense_Mutation SNP C T uc002iwx.2 PPM1E_uc010ddd.... Hybrid_Cap... view
PREX2 8 69143713 69143714 G402_SOFT_TISSU... 37 3'UTR Del TT - uc003xxv.1 Hybrid_Cap...
PRKD3 2 37480319 37480320 G402_SOFT_TISSU... 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 G402_SOFT_TISSU... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PSIP1 9 15465456 15465457 G402_SOFT_TISSU... 37 3'UTR Ins - T uc003zlv.3 PSIP1_uc003zlw.... Hybrid_Cap...
PTK6 20 62164170 62164170 G402_SOFT_TISSU... 37 Intron Del C - uc002yfg.2 PTK6_uc011aay.1... Hybrid_Cap...
RBPJ p.R238* 4 26426291 26426291 G402_SOFT_TISSU... 37 Nonsense_Mutation SNP C T rs5007634 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap... view
ROBO2 3 77666937 77666937 G402_SOFT_TISSU... 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RPS6KB1 17 58024224 58024225 G402_SOFT_TISSU... 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 G402_SOFT_TISSU... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
STAT1 2 191840353 191840353 G402_SOFT_TISSU... 37 Intron Del T - uc002usj.2 STAT1_uc010fse.... Hybrid_Cap...
STK25 2 242435659 242435662 G402_SOFT_TISSU... 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 G402_SOFT_TISSU... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TLK1 2 171850178 171850179 G402_SOFT_TISSU... 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TLN1 p.R2210C 9 35700220 35700220 G402_SOFT_TISSU... 37 Missense_Mutation SNP G A uc003zxt.2 Hybrid_Cap... view
TMEM123 11 102269398 102269398 G402_SOFT_TISSU... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNK2 p.D714D 3 195595216 195595216 G402_SOFT_TISSU... 37 Silent SNP G A uc003fvt.1 TNK2_uc003fvq.1... Hybrid_Cap... view
TNRC6B p.Q1328del 22 40697177 40697179 G402_SOFT_TISSU... 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TRPS1 8 116635872 116635873 G402_SOFT_TISSU... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSC2 16 2138671 2138672 G402_SOFT_TISSU... 37 3'UTR Del AA - uc002con.2 TSC2_uc010bsd.2... Hybrid_Cap...
UBE3B 12 109947357 109947358 G402_SOFT_TISSU... 37 Intron Ins - T uc001top.2 UBE3B_uc001toq.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 G402_SOFT_TISSU... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZNF423 p.P390L 16 49671894 49671894 G402_SOFT_TISSU... 37 Missense_Mutation SNP G A rs112570445 uc002efs.2 ZNF423_uc010vgn... Hybrid_Cap... view