Annotation Summary for Cell Line: GAMG  

Cell line primary name: GAMG
Cell line aliases:
Gender: F
Site Primary: central_nervous_system
Histology: glioma
Hist Subtype1: NS
Notes:
Source: DSMZ
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_B07_296026
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_D02_293354
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in GAMG

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 GAMG_CENTRAL_NE... 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM17 2 9630245 9630245 GAMG_CENTRAL_NE... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 GAMG_CENTRAL_NE... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS18 p.Q612* 16 77369678 77369678 GAMG_CENTRAL_NE... 37 Nonsense_Mutation SNP G A uc002ffc.3 ADAMTS18_uc010c... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 GAMG_CENTRAL_NE... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ARHGDIB p.V59M 12 15103472 15103472 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP C T uc001rcq.1 ARHGDIB_uc001rc... Hybrid_Cap... view
ARID1A 1 27107263 27107264 GAMG_CENTRAL_NE... 37 3'UTR Ins - C rs3841356 uc001bmv.1 ARID1A_uc001bmu... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 GAMG_CENTRAL_NE... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 GAMG_CENTRAL_NE... 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
DNAH8 6 38952247 38952250 GAMG_CENTRAL_NE... 37 Intron Del CACA - uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
DOCK3 p.L278V 3 51196678 51196678 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP C G uc011bds.1 Hybrid_Cap... view
DST p.L2163fs 6 56457036 56457037 GAMG_CENTRAL_NE... 37 Frame_Shift_Ins Ins - T uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap...
EDN1 6 12290729 12290729 GAMG_CENTRAL_NE... 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF4E 4 99808137 99808141 GAMG_CENTRAL_NE... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EPHA5 4 66189753 66189754 GAMG_CENTRAL_NE... 37 3'UTR Ins - T rs67487372 uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap...
EPHA7 6 93952979 93952979 GAMG_CENTRAL_NE... 37 3'UTR SNP G A uc003poe.2 EPHA7_uc003pof.... Hybrid_Cap... view
FBN1 p.Q2477R 15 48717589 48717589 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP T C uc001zwx.1 FBN1_uc010beo.1... Hybrid_Cap... view
FBXW7 p.15_16insP 4 153332910 153332911 GAMG_CENTRAL_NE... 37 In_Frame_Ins Ins - AGG uc003ims.2 FBXW7_uc011cii.... Hybrid_Cap...
FGFR3 4 1809128 1809129 GAMG_CENTRAL_NE... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 GAMG_CENTRAL_NE... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
GRIA3 X 122318386 122318387 GAMG_CENTRAL_NE... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 GAMG_CENTRAL_NE... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HDAC4 p.S400L 2 240056036 240056036 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP G A uc002vyk.3 HDAC4_uc010fyz.... Hybrid_Cap... view
ILK 11 6630029 6630029 GAMG_CENTRAL_NE... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 GAMG_CENTRAL_NE... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KSR2 p.A684T 12 117962739 117962739 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP C T uc001two.2 Hybrid_Cap... view
LRRK2 p.Q1365R 12 40702403 40702403 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP A G uc001rmg.3 LRRK2_uc009zjw.... Hybrid_Cap... view
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 GAMG_CENTRAL_NE... 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 GAMG_CENTRAL_NE... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 GAMG_CENTRAL_NE... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MCM3APAS 21 47671275 47671276 GAMG_CENTRAL_NE... 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MEF2A p.QQ428del 15 100252710 100252715 GAMG_CENTRAL_NE... 37 In_Frame_Del Del CAGCA... - uc010urw.1 MEF2A_uc010urv.... Hybrid_Cap...
MET 7 116381154 116381154 GAMG_CENTRAL_NE... 37 Intron SNP T G uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MKRN3 p.R90Q 15 23811198 23811198 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP G A uc001ywh.3 MKRN3_uc001ywi.... Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 GAMG_CENTRAL_NE... 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MYLK 3 123332876 123332876 GAMG_CENTRAL_NE... 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 GAMG_CENTRAL_NE... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 GAMG_CENTRAL_NE... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFKB1 p.D917_splice 4 103537590 103537590 GAMG_CENTRAL_NE... 37 Splice_Site_SNP SNP G A uc011cep.1 NFKB1_uc011ceq.... Hybrid_Cap... view
NIN p.Q1587P 14 51219426 51219426 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP T G uc001wyi.2 NIN_uc001wyj.2_... Hybrid_Cap... view
NOTCH2 p.K1641T 1 120465339 120465339 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP T G uc001eik.2 Hybrid_Cap... view
NPM1 5 170837734 170837734 GAMG_CENTRAL_NE... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 GAMG_CENTRAL_NE... 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223158653 223158653 GAMG_CENTRAL_NE... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.Q1665fs 1 144873963 144873963 GAMG_CENTRAL_NE... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 GAMG_CENTRAL_NE... 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGR 11 100933598 100933599 GAMG_CENTRAL_NE... 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2G 12 18800990 18800990 GAMG_CENTRAL_NE... 37 3'UTR Del A - rs16914368 uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 GAMG_CENTRAL_NE... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPRD p.V1284D 9 8460435 8460435 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP A T uc003zkk.2 PTPRD_uc003zkp.... Hybrid_Cap... view
RAPGEF2 p.E146G 4 160243565 160243565 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP A G uc003iqg.3 Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 GAMG_CENTRAL_NE... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
SBDS 7 66460416 66460416 GAMG_CENTRAL_NE... 37 5'UTR SNP A C uc003tvm.1 TYW1_uc003tvn.2... Hybrid_Cap... view
SHH 7 155604884 155604884 GAMG_CENTRAL_NE... 37 5'UTR SNP G C rs111495739 uc003wmk.1 Hybrid_Cap... view
SIK2 p.I79V 11 111487066 111487066 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP A G uc001plt.2 Hybrid_Cap... view
SMARCA4 p.E1531* 19 11169001 11169001 GAMG_CENTRAL_NE... 37 Nonsense_Mutation SNP G T uc010dxo.2 SMARCA4_uc002mq... Hybrid_Cap... view
STK31 7 23872024 23872025 GAMG_CENTRAL_NE... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TMEM123 11 102269398 102269398 GAMG_CENTRAL_NE... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 GAMG_CENTRAL_NE... 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP53 p.L265P 17 7577144 7577144 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP A G uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 GAMG_CENTRAL_NE... 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TTN 2 179391639 179391640 GAMG_CENTRAL_NE... 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.S3280P 2 179629404 179629404 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP A G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 GAMG_CENTRAL_NE... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WNK2 p.P1552S 9 96051579 96051579 GAMG_CENTRAL_NE... 37 Missense_Mutation SNP C T uc004ati.1 WNK2_uc011lud.1... Hybrid_Cap... view