Annotation Summary for Cell Line: GCIY  

Cell line primary name: GCIY
Cell line aliases:
Gender: F
Site Primary: stomach
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: RIKEN
Expression arrays: BUNDS_p_NCLE_RNA5_HG-U133_Plus_2_A12_419874
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_D11_411014
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in GCIY

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ABCC4 13 95748172 95748172 GCIY_STOMACH 37 Intron SNP A T uc001vmd.3 ABCC4_uc010afk.... Hybrid_Cap... view
ADAM28 8 24211994 24211997 GCIY_STOMACH 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 GCIY_STOMACH 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP4 p.G588E X 49957601 49957601 GCIY_STOMACH 37 Missense_Mutation SNP C T uc004dow.1 AKAP4_uc004dov.... Hybrid_Cap... view
ALPK1 4 113347609 113347610 GCIY_STOMACH 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 GCIY_STOMACH 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
AURKC 19 57742531 57742532 GCIY_STOMACH 37 5'UTR Ins - C uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
AXIN2 17 63526006 63526006 GCIY_STOMACH 37 3'UTR SNP T C uc002jfi.2 AXIN2_uc002jfh.... Hybrid_Cap... view
BRIP1 p.M29I 17 59938814 59938814 GCIY_STOMACH 37 Missense_Mutation SNP C A uc002izk.1 Hybrid_Cap... view
BTG1 12 92537706 92537707 GCIY_STOMACH 37 3'UTR Ins - T rs33983967 uc001tby.3 BTG1_uc001tbv.1... Hybrid_Cap...
CDH1 p.T229_splice 16 68842751 68842752 GCIY_STOMACH 37 Splice_Site_Del Del TG - uc002ewg.1 CDH1_uc010vlj.1... Hybrid_Cap...
CDK11B 1 1654066 1654068 GCIY_STOMACH 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 GCIY_STOMACH 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHD9 p.R2103C 16 53338225 53338225 GCIY_STOMACH 37 Missense_Mutation SNP C T uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap... view
CHIC2 4 54876132 54876132 GCIY_STOMACH 37 3'UTR Del C - rs4437313 uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 GCIY_STOMACH 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CPAMD8 p.N263del 19 17115106 17115108 GCIY_STOMACH 37 In_Frame_Del Del TTG - uc002nfb.2 Hybrid_Cap...
CYP1B1 2 38297654 38297655 GCIY_STOMACH 37 3'UTR Ins - A rs9341258 uc002rqo.2 Hybrid_Cap...
DACH1 13 72014625 72014626 GCIY_STOMACH 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DDR2 1 162750211 162750212 GCIY_STOMACH 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DGCR14 22 19120047 19120047 GCIY_STOMACH 37 3'UTR SNP C T uc002zou.2 DGCR14_uc002zot... Hybrid_Cap... view
DGKB 7 14216345 14216346 GCIY_STOMACH 37 Intron Ins - AGACT uc003ssz.2 DGKB_uc011jxt.1... Hybrid_Cap...
DIP2C 10 428447 428448 GCIY_STOMACH 37 Intron Del AG - uc001ifp.2 DIP2C_uc009xhj.... Hybrid_Cap...
EDN1 6 12290729 12290729 GCIY_STOMACH 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF4G1 p.E472del 3 184039744 184039746 GCIY_STOMACH 37 In_Frame_Del Del GAA - uc010hxx.2 EIF4G1_uc003fno... Hybrid_Cap...
EIF5A p.K27R 17 7212944 7212944 GCIY_STOMACH 37 Missense_Mutation SNP A G uc002gfr.2 EIF5A_uc010vtu.... Hybrid_Cap... view
FBN2 5 127595036 127595036 GCIY_STOMACH 37 3'UTR SNP G C uc003kuu.2 Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 GCIY_STOMACH 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128563982 128563982 GCIY_STOMACH 37 5'UTR SNP A G uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap... view
FLI1 11 128638217 128638217 GCIY_STOMACH 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 GCIY_STOMACH 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 GCIY_STOMACH 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 GCIY_STOMACH 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HAPLN1 5 82969351 82969351 GCIY_STOMACH 37 5'UTR SNP C G uc003kim.2 HAPLN1_uc003kin... Hybrid_Cap... view
HIF1A 14 62213929 62213930 GCIY_STOMACH 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HSP90B1 p.E791del 12 104341188 104341190 GCIY_STOMACH 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
IL17RD p.I329V 3 57135386 57135386 GCIY_STOMACH 37 Missense_Mutation SNP T C uc003dil.2 IL17RD_uc003dik... Hybrid_Cap... view
ILK 11 6630029 6630029 GCIY_STOMACH 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ILK p.D330N 11 6631176 6631176 GCIY_STOMACH 37 Missense_Mutation SNP G A uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 GCIY_STOMACH 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDM5A p.Q1197P 12 416960 416960 GCIY_STOMACH 37 Missense_Mutation SNP T G uc001qif.1 KDM5A_uc001qie.... Hybrid_Cap... view
LATS2 13 21620222 21620223 GCIY_STOMACH 37 5'UTR Ins - A rs61240127;rs115723063 uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap...
LRP1B p.I1263T 2 141643883 141643883 GCIY_STOMACH 37 Missense_Mutation SNP A G uc002tvj.1 LRP1B_uc010fnl.... Hybrid_Cap... view
MAML1 p.N358K 5 179193085 179193085 GCIY_STOMACH 37 Missense_Mutation SNP T A uc003mkm.2 MAML1_uc003mkn.... Hybrid_Cap... view
MAML1 5 179201952 179201952 GCIY_STOMACH 37 3'UTR SNP A G uc003mkm.2 MAML1_uc003mkn.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 GCIY_STOMACH 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K6 17 67516340 67516341 GCIY_STOMACH 37 Intron Ins - T uc002jij.2 MAP2K6_uc002jii... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 GCIY_STOMACH 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K11 11 65365643 65365644 GCIY_STOMACH 37 3'UTR Ins - G uc001oew.2 KCNK7_uc001oeq.... Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 GCIY_STOMACH 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPK3 p.R87R 16 30133237 30133237 GCIY_STOMACH 37 Silent SNP C G uc002dws.2 BOLA2_uc010bzb.... Hybrid_Cap... view
MAPKBP1 p.G839R 15 42113045 42113045 GCIY_STOMACH 37 Missense_Mutation SNP G A uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap... view
MECOM p.T786R 3 168833303 168833303 GCIY_STOMACH 37 Missense_Mutation SNP G C uc011bpj.1 MECOM_uc010hwk.... Hybrid_Cap... view
MLL3 p.P1838S 7 151879433 151879433 GCIY_STOMACH 37 Missense_Mutation SNP G A uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MLLT10 p.S649T 10 22015191 22015191 GCIY_STOMACH 37 Missense_Mutation SNP T A uc001iqs.2 MLLT10_uc001iqt... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 GCIY_STOMACH 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 GCIY_STOMACH 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 GCIY_STOMACH 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 GCIY_STOMACH 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 113092167 113092167 GCIY_STOMACH 37 Intron SNP C T uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 GCIY_STOMACH 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NF1 p.K2456K 17 29677247 29677247 GCIY_STOMACH 37 Silent SNP A G uc002hgg.2 NF1_uc002hgh.2_... Hybrid_Cap... view
NFIA 1 61921185 61921186 GCIY_STOMACH 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH4 p.15_16LL>L 6 32191659 32191661 GCIY_STOMACH 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NPR1 1 153665919 153665920 GCIY_STOMACH 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 GCIY_STOMACH 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAPPA p.E1615del 9 119158852 119158854 GCIY_STOMACH 37 In_Frame_Del Del AAG - uc004bjn.2 PAPPA_uc011lxq.... Hybrid_Cap...
PAX3 2 223066017 223066018 GCIY_STOMACH 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 GCIY_STOMACH 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.R315* 1 144922225 144922225 GCIY_STOMACH 37 Nonsense_Mutation SNP G A uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PIK3C2A 11 17111198 17111199 GCIY_STOMACH 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 GCIY_STOMACH 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAPGEF2 4 160189201 160189201 GCIY_STOMACH 37 5'UTR Del T - uc003iqg.3 Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 GCIY_STOMACH 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
SDHB p.G96_splice 1 17359554 17359554 GCIY_STOMACH 37 Splice_Site_SNP SNP C T uc001bae.2 Hybrid_Cap... view
SOS1 2 39278565 39278565 GCIY_STOMACH 37 Intron SNP A G uc002rrk.3 SOS1_uc010ynr.1... Hybrid_Cap... view
SSU72 1 1477324 1477325 GCIY_STOMACH 37 3'UTR Del CA - rs72502747 uc001agd.2 C1orf70_uc009vk... Hybrid_Cap...
STK31 7 23872024 23872025 GCIY_STOMACH 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TG p.D2595Y 8 134128881 134128881 GCIY_STOMACH 37 Missense_Mutation SNP G T uc003ytw.2 TG_uc010mdw.2_M... Hybrid_Cap... view
TLK1 2 171850178 171850179 GCIY_STOMACH 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TP53 p.H179Q 17 7578393 7578393 GCIY_STOMACH 37 Missense_Mutation SNP A C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP53 p.E11Q 17 7579882 7579882 GCIY_STOMACH 37 Missense_Mutation SNP C G uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 GCIY_STOMACH 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TP73 p.T143M 1 3624354 3624354 GCIY_STOMACH 37 Missense_Mutation SNP C T uc001akp.2 TP73_uc001akq.2... Hybrid_Cap... view
TPR p.K1022Q 1 186315299 186315299 GCIY_STOMACH 37 Missense_Mutation SNP T G uc001grv.2 Hybrid_Cap... view
TTN 2 179391639 179391640 GCIY_STOMACH 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.L30861R 2 179401188 179401188 GCIY_STOMACH 37 Missense_Mutation SNP A C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 GCIY_STOMACH 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
XIAP p.E350del X 123025155 123025157 GCIY_STOMACH 37 In_Frame_Del Del GAG - uc010nqu.2 XIAP_uc004etx.2... Hybrid_Cap...