Annotation Summary for Cell Line: HCC1419  

Cell line primary name: HCC1419
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_A07_474600
SNP arrays: BOWER_p_NCLE_DNAAffy8_GenomeWideSNP_6_A08_464616
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC1419

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 HCC1419_BREAST 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ACACB p.D414N 12 109613759 109613759 HCC1419_BREAST 37 Missense_Mutation SNP G A uc001tob.2 ACACB_uc001toc.... Hybrid_Cap... view
ADAM28 8 24211994 24211997 HCC1419_BREAST 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS18 p.P1116T 16 77325219 77325219 HCC1419_BREAST 37 Missense_Mutation SNP G T uc002ffc.3 Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 HCC1419_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 HCC1419_BREAST 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ANGPTL4 p.S290T 19 8436235 8436235 HCC1419_BREAST 37 Missense_Mutation SNP T A uc002mjq.1 ANGPTL4_uc002mj... Hybrid_Cap... view
ASPH p.A264_splice 8 62550924 62550925 HCC1419_BREAST 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
AXL p.M684V 19 41762370 41762370 HCC1419_BREAST 37 Missense_Mutation SNP A G uc010ehj.2 CYP2F1_uc010xvw... Hybrid_Cap... view
CACNB2 10 18828721 18828722 HCC1419_BREAST 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC1419_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 p.G430R 3 1371543 1371543 HCC1419_BREAST 37 Missense_Mutation SNP G A uc003boz.2 CNTN6_uc011asj.... Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 HCC1419_BREAST 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CUBN p.G1426A 10 17032406 17032406 HCC1419_BREAST 37 Missense_Mutation SNP C G uc001ioo.2 Hybrid_Cap... view
EIF4E 4 99808137 99808141 HCC1419_BREAST 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EP300 22 41574970 41574972 HCC1419_BREAST 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPS15 1 51822220 51822220 HCC1419_BREAST 37 3'UTR Del A - uc001csq.1 EPS15_uc009vyz.... Hybrid_Cap...
ERBB3 12 56492195 56492196 HCC1419_BREAST 37 Intron Ins - A rs74647738;rs77351535 uc001sjh.2 ERBB3_uc009zoj.... Hybrid_Cap...
ETV1 7 14028708 14028708 HCC1419_BREAST 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FLT1 13 28896515 28896515 HCC1419_BREAST 37 Intron SNP G A uc001usb.3 FLT1_uc010aap.2... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC1419_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 HCC1419_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 HCC1419_BREAST 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HRAS p.R128W 11 533521 533521 HCC1419_BREAST 37 Missense_Mutation SNP G A uc001lpv.2 HRAS_uc010qvw.1... Hybrid_Cap... view
HSP90AA1 p.S374L 14 102551244 102551244 HCC1419_BREAST 37 Missense_Mutation SNP G A uc001ykv.3 HSP90AA1_uc001y... Hybrid_Cap... view
HSPB8 p.V119L 12 119617472 119617472 HCC1419_BREAST 37 Missense_Mutation SNP G T uc001txb.2 HSPB8_uc001txc.... Hybrid_Cap... view
ILK 11 6630029 6630029 HCC1419_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 HCC1419_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
MAF 16 79628325 79628325 HCC1419_BREAST 37 3'UTR Del A - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 HCC1419_BREAST 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 HCC1419_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC1419_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 HCC1419_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K2 p.E49Q 2 128095333 128095333 HCC1419_BREAST 37 Missense_Mutation SNP C G uc002toj.1 MAP3K2_uc010flz... Hybrid_Cap... view
MAP3K4 p.A1199del 6 161519351 161519353 HCC1419_BREAST 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MECOM p.L1075M 3 168807966 168807966 HCC1419_BREAST 37 Missense_Mutation SNP A T uc011bpj.1 MECOM_uc010hwk.... Hybrid_Cap... view
MYLK2 p.C550Y 20 30419878 30419878 HCC1419_BREAST 37 Missense_Mutation SNP G A uc002wwq.2 MYLK2_uc002wws.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 HCC1419_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC1419_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 HCC1419_BREAST 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NOTCH4 p.15_16LL>L 6 32191659 32191661 HCC1419_BREAST 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NPR1 1 153665919 153665920 HCC1419_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 HCC1419_BREAST 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223066017 223066018 HCC1419_BREAST 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 HCC1419_BREAST 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PGGT1B 5 114548071 114548072 HCC1419_BREAST 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 HCC1419_BREAST 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 HCC1419_BREAST 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3C2G 12 18800990 18800990 HCC1419_BREAST 37 3'UTR Del A - rs16914368 uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PMS1 2 190670539 190670540 HCC1419_BREAST 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PPARGC1A p.Y634C 4 23814488 23814488 HCC1419_BREAST 37 Missense_Mutation SNP T C uc003gqs.2 PPARGC1A_uc003g... Hybrid_Cap... view
PRKACB p.E114D 1 84647975 84647975 HCC1419_BREAST 37 Missense_Mutation SNP A T uc001djl.2 PRKACB_uc001djj... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 HCC1419_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAGE p.S361L 14 102695894 102695894 HCC1419_BREAST 37 Missense_Mutation SNP G A uc001ylm.2 RAGE_uc010txv.1... Hybrid_Cap... view
RBPJ 4 26432645 26432645 HCC1419_BREAST 37 3'UTR SNP T G uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 HCC1419_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
ROBO1 3 78647940 78647940 HCC1419_BREAST 37 3'UTR Del T - rs66635326 uc003dqe.2 ROBO1_uc003dqb.... Hybrid_Cap...
RPS6KA5 14 91360733 91360734 HCC1419_BREAST 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
SULF1 8 70570946 70570950 HCC1419_BREAST 37 3'UTR Del AAAAC - rs112665345 uc010lza.1 SULF1_uc003xyd.... Hybrid_Cap...
TEC 4 48139307 48139310 HCC1419_BREAST 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TG p.D2091Y 8 134024154 134024154 HCC1419_BREAST 37 Missense_Mutation SNP G T uc003ytw.2 TG_uc010mdw.2_M... Hybrid_Cap... view
TOPBP1 p.Q219R 3 133374220 133374220 HCC1419_BREAST 37 Missense_Mutation SNP T C uc003eps.2 Hybrid_Cap... view
TP53 p.Y220C 17 7578190 7578190 HCC1419_BREAST 37 Missense_Mutation SNP T C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TPR p.Q1517R 1 186305783 186305783 HCC1419_BREAST 37 Missense_Mutation SNP T C uc001grv.2 Hybrid_Cap... view
TRPM8 p.V1065I 2 234915559 234915559 HCC1419_BREAST 37 Missense_Mutation SNP G A uc002vvh.2 TRPM8_uc010fyj.... Hybrid_Cap... view
ULK4 p.L920V 3 41746572 41746572 HCC1419_BREAST 37 Missense_Mutation SNP A C uc003ckv.3 Hybrid_Cap... view