Annotation Summary for Cell Line: HCC1428  

Cell line primary name: HCC1428
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: NS
Notes:
Source: ATCC
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_A12_474732
SNP arrays: VAULT_p_NCLE_DNAAffy14_GenomeWideSNP_6_F08_698666
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC1428

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 HCC1428_BREAST 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABL2 1 179086419 179086420 HCC1428_BREAST 37 Intron Ins - A rs72207641 uc001gmj.3 ABL2_uc010pnf.1... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 HCC1428_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 HCC1428_BREAST 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 HCC1428_BREAST 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 HCC1428_BREAST 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
AR p.A680G X 66931397 66931397 HCC1428_BREAST 37 Missense_Mutation SNP C G uc004dwu.1 AR_uc004dwv.1_M... Hybrid_Cap... view
ASPH p.A264_splice 8 62550924 62550925 HCC1428_BREAST 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
BIRC6 p.Q605fs 2 32640173 32640173 HCC1428_BREAST 37 Frame_Shift_Del Del A - uc010ezu.2 Hybrid_Cap...
CACNB2 10 18828721 18828722 HCC1428_BREAST 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CHD5 p.F1131F 1 6189124 6189124 HCC1428_BREAST 37 Silent SNP G A uc001amb.1 CHD5_uc001alz.1... Hybrid_Cap... view
CIC p.R572W 19 42794634 42794634 HCC1428_BREAST 37 Missense_Mutation SNP C T uc002otf.1 Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC1428_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
DACH1 p.I250fs 13 72440145 72440154 HCC1428_BREAST 37 Frame_Shift_Del Del CCCTC... - uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DFFA p.L50V 1 10529384 10529384 HCC1428_BREAST 37 Missense_Mutation SNP G C uc001arj.2 DFFA_uc001ark.2... Hybrid_Cap... view
DST 6 56483323 56483323 HCC1428_BREAST 37 Intron SNP C G uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
EHBP1 2 63272721 63272721 HCC1428_BREAST 37 3'UTR SNP C G uc002sby.2 EHBP1_uc010fcp.... Hybrid_Cap... view
ELAVL1 p.N280S 19 8028509 8028509 HCC1428_BREAST 37 Missense_Mutation SNP T C uc002mjb.2 Hybrid_Cap... view
ELN p.G693R 7 73480300 73480300 HCC1428_BREAST 37 Missense_Mutation SNP G A uc003tzw.2 RFC2_uc011kfa.1... Hybrid_Cap... view
EPHA6 3 97367230 97367231 HCC1428_BREAST 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 HCC1428_BREAST 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 HCC1428_BREAST 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 HCC1428_BREAST 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLT4 5 180035183 180035185 HCC1428_BREAST 37 Intron Del AGT - uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap...
FN1 p.L768I 2 216273147 216273147 HCC1428_BREAST 37 Missense_Mutation SNP G T uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap... view
FYN p.G482V 6 111983111 111983111 HCC1428_BREAST 37 Missense_Mutation SNP C A uc003pvj.2 FYN_uc003pvi.2_... Hybrid_Cap... view
GPR112 p.T1868I X 135431468 135431468 HCC1428_BREAST 37 Missense_Mutation SNP C T rs41309534 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC1428_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 HCC1428_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIK1 p.D391H 21 30971185 30971185 HCC1428_BREAST 37 Missense_Mutation SNP C G uc011acs.1 GRIK1_uc002ynn.... Hybrid_Cap... view
ICK p.L249F 6 52880965 52880965 HCC1428_BREAST 37 Missense_Mutation SNP C A uc003pbh.2 ICK_uc003pbi.2_... Hybrid_Cap... view
ILK 11 6630029 6630029 HCC1428_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
IRF4 6 407630 407630 HCC1428_BREAST 37 3'UTR Del T - uc003msz.3 IRF4_uc003mta.3... Hybrid_Cap...
ITGB4 p.A243T 17 73725506 73725506 HCC1428_BREAST 37 Missense_Mutation SNP G A uc002jpg.2 ITGB4_uc002jph.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 HCC1428_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 HCC1428_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC1428_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 HCC1428_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 p.A1199del 6 161519351 161519353 HCC1428_BREAST 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MAP4K1 p.K476* 19 39096069 39096069 HCC1428_BREAST 37 Nonsense_Mutation SNP T A uc002oix.1 MAP4K1_uc002oiw... Hybrid_Cap... view
MAPK14 6 36076345 36076354 HCC1428_BREAST 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MLH1 p.D132H 3 37048495 37048495 HCC1428_BREAST 37 Missense_Mutation SNP G C uc003cgl.2 MLH1_uc011aye.1... Hybrid_Cap... view
MMP2 p.R175C 16 55518070 55518070 HCC1428_BREAST 37 Missense_Mutation SNP C T uc002ehz.3 MMP2_uc010vhd.1... Hybrid_Cap... view
MYH1 p.E1409K 17 10401191 10401191 HCC1428_BREAST 37 Missense_Mutation SNP C T uc002gmo.2 Hybrid_Cap... view
MYO3A p.N902T 10 26442848 26442848 HCC1428_BREAST 37 Missense_Mutation SNP A C uc001isn.2 MYO3A_uc009xko.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 HCC1428_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC1428_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 HCC1428_BREAST 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NFKB1 p.V135F 4 103488287 103488288 HCC1428_BREAST 37 Missense_Mutation DNP GG TT uc011cep.1 NFKB1_uc011ceq.... Hybrid_Cap...
NFKB1 p.D917_splice 4 103534740 103534741 HCC1428_BREAST 37 Splice_Site_Ins Ins - A rs35795162 uc011cep.1 NFKB1_uc011ceq.... Hybrid_Cap...
NIPBL p.E1515* 5 37010310 37010310 HCC1428_BREAST 37 Nonsense_Mutation SNP G T uc003jkl.3 NIPBL_uc003jkk.... Hybrid_Cap... view
NPR1 1 153665919 153665920 HCC1428_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 HCC1428_BREAST 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP153 p.C404G 6 17665475 17665475 HCC1428_BREAST 37 Missense_Mutation SNP A C uc011dje.1 NUP153_uc003ncd... Hybrid_Cap... view
NUP214 9 134067556 134067557 HCC1428_BREAST 37 Intron Ins - T rs66652901 uc004cag.2 NUP214_uc004cah... Hybrid_Cap...
PDE4DIP 1 144863548 144863548 HCC1428_BREAST 37 Intron SNP A C uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDE4DIP p.K1948E 1 144864253 144864253 HCC1428_BREAST 37 Missense_Mutation SNP T C uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDE4DIP p.Q1665fs 1 144873963 144873963 HCC1428_BREAST 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 HCC1428_BREAST 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIP4K2A p.G380_splice 10 22828899 22828899 HCC1428_BREAST 37 Splice_Site_SNP SNP C G uc001irl.3 PIP4K2A_uc010qc... Hybrid_Cap... view
PLK2 p.A110T 5 57754862 57754862 HCC1428_BREAST 37 Missense_Mutation SNP C T uc003jrn.2 PLK2_uc011cql.1... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 HCC1428_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG1 10 52751071 52751079 HCC1428_BREAST 37 5'UTR Del GCCGC... - uc001jjm.2 PRKG1_uc010qhp.... Hybrid_Cap...
PTPRD p.F1823I 9 8331649 8331649 HCC1428_BREAST 37 Missense_Mutation SNP A T uc003zkk.2 PTPRD_uc003zkp.... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 HCC1428_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
SCD5 p.E25Q 4 83719618 83719618 HCC1428_BREAST 37 Missense_Mutation SNP C G uc003hna.2 SCD5_uc003hnb.3... Hybrid_Cap... view
SMAD4 p.EKK49del 18 48573561 48573569 HCC1428_BREAST 37 In_Frame_Del Del GAGAA... - uc010xdp.1 SMAD4_uc010xdo.... Hybrid_Cap...
SMURF1 p.C97Y 7 98655088 98655088 HCC1428_BREAST 37 Missense_Mutation SNP C T uc003upu.1 SMURF1_uc003upv... Hybrid_Cap... view
STK31 7 23872024 23872025 HCC1428_BREAST 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TFEB p.T69T 6 41658787 41658787 HCC1428_BREAST 37 Silent SNP G T uc003oqu.1 TFEB_uc003oqs.1... Hybrid_Cap... view
TNK2 3 195610235 195610235 HCC1428_BREAST 37 Intron SNP G A uc003fvt.1 TNK2_uc003fvs.1... Hybrid_Cap... view
TTN p.P28452S 2 179413295 179413295 HCC1428_BREAST 37 Missense_Mutation SNP G A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.T11844R 2 179497498 179497498 HCC1428_BREAST 37 Missense_Mutation SNP G C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 HCC1428_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VPS13B p.E429K 8 100146938 100146938 HCC1428_BREAST 37 Missense_Mutation SNP G A uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view
WNK4 p.P609L 17 40939880 40939880 HCC1428_BREAST 37 Missense_Mutation SNP C T uc002ibj.2 WNK4_uc010wgx.1... Hybrid_Cap... view
ZNF608 p.R1326Q 5 123980083 123980083 HCC1428_BREAST 37 Missense_Mutation SNP C T rs61749625 uc003ktq.1 ZNF608_uc003ktr... Hybrid_Cap... view
ZNF643 p.E296D 1 40928544 40928544 HCC1428_BREAST 37 Missense_Mutation SNP A T uc001cfn.1 ZNF643_uc001cfl... Hybrid_Cap... view