Annotation Summary for Cell Line: HCC1500  

Cell line primary name: HCC1500
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: SILOS_p_NCLE_RNA9_HG-U133_Plus_2_D09_523496
SNP arrays: BOWER_p_NCLE_DNAAffy8_GenomeWideSNP_6_A04_464624
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC1500

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ABCA3 p.G757S 16 2345736 2345736 HCC1500_BREAST 37 Missense_Mutation SNP C T uc002cpy.1 ABCA3_uc010bsk.... Hybrid_Cap... view
ADAM28 8 24211994 24211997 HCC1500_BREAST 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AIFM3 p.L105V 22 21328114 21328114 HCC1500_BREAST 37 Missense_Mutation SNP C G uc002ztj.2 AIFM3_uc002ztk.... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 HCC1500_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 HCC1500_BREAST 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ATM p.W2638* 11 108203613 108203613 HCC1500_BREAST 37 Nonsense_Mutation SNP G A uc001pkb.1 ATM_uc009yxr.1_... Hybrid_Cap... view
BAT3 p.T178S 6 31616473 31616473 HCC1500_BREAST 37 Missense_Mutation SNP G C uc003nvg.3 BAT3_uc003nvf.3... Hybrid_Cap... view
BAX p.A213V 19 49464335 49464335 HCC1500_BREAST 37 Missense_Mutation SNP C T uc002plf.1 BAX_uc002plg.1_... Hybrid_Cap... view
BMP2K p.H686R 4 79808433 79808433 HCC1500_BREAST 37 Missense_Mutation SNP A G uc003hlk.2 PAQR3_uc003hlm.... Hybrid_Cap... view
CAMK1G 1 209785649 209785649 HCC1500_BREAST 37 Intron SNP C T uc001hhd.2 CAMK1G_uc001hhf... Hybrid_Cap... view
CARD10 p.KE272del 22 37906309 37906314 HCC1500_BREAST 37 In_Frame_Del Del CTCCT... - uc003asx.1 CARD10_uc003ast... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 HCC1500_BREAST 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC1500_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 HCC1500_BREAST 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
CSMD3 p.C512Y 8 113933954 113933954 HCC1500_BREAST 37 Missense_Mutation SNP C T uc003ynu.2 CSMD3_uc003ynt.... Hybrid_Cap... view
CSNK2A1 20 464529 464529 HCC1500_BREAST 37 3'UTR SNP C T uc002wdw.1 CSNK2A1_uc002wd... Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 HCC1500_BREAST 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
DYRK1A 21 38884966 38884967 HCC1500_BREAST 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EDN1 6 12296150 12296151 HCC1500_BREAST 37 Intron Ins - T rs66570617 uc003nae.3 EDN1_uc003nad.2... Hybrid_Cap...
EIF2AK1 p.T538I 7 6066510 6066510 HCC1500_BREAST 37 Missense_Mutation SNP G A uc003spp.2 EIF2AK1_uc003sp... Hybrid_Cap... view
EPHA6 3 97367230 97367231 HCC1500_BREAST 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ERBB3 12 56490174 56490174 HCC1500_BREAST 37 Intron SNP C T uc001sjh.2 ERBB3_uc009zoj.... Hybrid_Cap... view
ETV1 7 14028708 14028708 HCC1500_BREAST 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FANCM p.A299V 14 45618176 45618176 HCC1500_BREAST 37 Missense_Mutation SNP C T uc001wwd.3 FANCM_uc001wwc.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 HCC1500_BREAST 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 HCC1500_BREAST 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLT1 13 28903962 28903962 HCC1500_BREAST 37 Intron SNP C G uc001usb.3 FLT1_uc010aaq.2... Hybrid_Cap... view
FMN2 p.A944P 1 240370930 240370930 HCC1500_BREAST 37 Missense_Mutation SNP G C uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap... view
FMN2 p.P1116del 1 240371434 240371436 HCC1500_BREAST 37 In_Frame_Del Del CCT - uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
GOPC p.Y462del 6 117884418 117884420 HCC1500_BREAST 37 In_Frame_Del Del TAA - rs79419780 uc003pxu.2 GOPC_uc003pxq.1... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 HCC1500_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 HCC1500_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HLF 17 53345025 53345025 HCC1500_BREAST 37 Intron SNP A G uc002iug.1 HLF_uc010dce.1_... Hybrid_Cap... view
HNF1A 12 121434630 121434631 HCC1500_BREAST 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 HCC1500_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 HCC1500_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 HCC1500_BREAST 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 HCC1500_BREAST 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 HCC1500_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC1500_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K4 p.A1199del 6 161519351 161519353 HCC1500_BREAST 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MLL3 p.Q3464L 7 151860271 151860271 HCC1500_BREAST 37 Missense_Mutation SNP T A uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MMP20 p.P283H 11 102477371 102477371 HCC1500_BREAST 37 Missense_Mutation SNP G T uc001phc.2 Hybrid_Cap... view
MSH2 2 47630321 47630321 HCC1500_BREAST 37 5'UTR SNP A G uc002rvz.2 MSH2_uc010yoh.1... Hybrid_Cap... view
MYH11 16 15797782 15797783 HCC1500_BREAST 37 3'UTR Ins - T rs5815842 uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 HCC1500_BREAST 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 HCC1500_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC1500_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279864 46279866 HCC1500_BREAST 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NLRP3 1 247611982 247611982 HCC1500_BREAST 37 3'UTR Del C - uc001icr.2 NLRP3_uc001ics.... Hybrid_Cap...
NOTCH4 p.15_16LL>L 6 32191659 32191661 HCC1500_BREAST 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NPR1 1 153665919 153665920 HCC1500_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 HCC1500_BREAST 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
OBSCN p.Q2997H 1 228471457 228471457 HCC1500_BREAST 37 Missense_Mutation SNP G C uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap... view
PAPPA p.A1209T 9 119106835 119106835 HCC1500_BREAST 37 Missense_Mutation SNP G A uc004bjn.2 PAPPA_uc011lxq.... Hybrid_Cap... view
PCM1 8 17813252 17813252 HCC1500_BREAST 37 Intron SNP G C uc003wyi.3 PCM1_uc011kyh.1... Hybrid_Cap... view
PDE4DIP 1 144994924 144994924 HCC1500_BREAST 37 5'UTR SNP G A uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDZRN4 12 41903438 41903438 HCC1500_BREAST 37 Intron SNP C T uc010skn.1 PDZRN4_uc001rmq... Hybrid_Cap... view
PIK3CD p.F633L 1 9781517 9781517 HCC1500_BREAST 37 Missense_Mutation SNP C G uc001aqe.3 PIK3CD_uc001aqb... Hybrid_Cap... view
PMS1 2 190670539 190670540 HCC1500_BREAST 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKCA 17 64298959 64298960 HCC1500_BREAST 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKCB p.A509T 16 24192241 24192241 HCC1500_BREAST 37 Missense_Mutation SNP G A uc002dme.2 PRKCB_uc002dmd.... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 HCC1500_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRPF4B p.S368T 6 4032853 4032853 HCC1500_BREAST 37 Missense_Mutation SNP T A uc003mvv.2 PRPF4B_uc011dhv... Hybrid_Cap... view
RBL2 p.A232fs 16 53485672 53485672 HCC1500_BREAST 37 Frame_Shift_Del Del C - uc002ehi.3 RBL2_uc010vgv.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 HCC1500_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPGRIP1 14 21792599 21792599 HCC1500_BREAST 37 Intron SNP G A uc001wag.2 RPGRIP1_uc001wa... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 HCC1500_BREAST 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
SPEG p.R3172Q 2 220356886 220356886 HCC1500_BREAST 37 Missense_Mutation SNP G A uc010fwg.2 Hybrid_Cap... view
TNIK p.S340C 3 170875451 170875451 HCC1500_BREAST 37 Missense_Mutation SNP G C uc003fhh.2 TNIK_uc003fhi.2... Hybrid_Cap... view
TNRC6B p.Q1328del 22 40697177 40697179 HCC1500_BREAST 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TPR p.S453G 1 186328963 186328963 HCC1500_BREAST 37 Missense_Mutation SNP T C uc001grv.2 TPR_uc010pop.1_... Hybrid_Cap... view
TRPM7 p.I810T 15 50902010 50902010 HCC1500_BREAST 37 Missense_Mutation SNP A G uc001zyt.3 TRPM7_uc010bew.... Hybrid_Cap... view
TTN 2 179391639 179391640 HCC1500_BREAST 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
UBE3B 12 109947357 109947358 HCC1500_BREAST 37 Intron Ins - T uc001top.2 UBE3B_uc001toq.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 HCC1500_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...