Annotation Summary for Cell Line: HCC1599  

Cell line primary name: HCC1599
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: SILOS_p_NCLE_RNA9_HG-U133_Plus_2_D10_523634
SNP arrays: BOWER_p_NCLE_DNAAffy8_GenomeWideSNP_6_H11_464630
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC1599

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 HCC1599_BREAST 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABCC4 p.E1152_splice 13 95705348 95705348 HCC1599_BREAST 37 Splice_Site_SNP SNP C A uc001vmd.3 ABCC4_uc010afj.... Hybrid_Cap... view
ACACB p.E1564Q 12 109677662 109677662 HCC1599_BREAST 37 Missense_Mutation SNP G C uc001tob.2 ACACB_uc001toc.... Hybrid_Cap... view
ADAM17 2 9630245 9630245 HCC1599_BREAST 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 HCC1599_BREAST 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 HCC1599_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 HCC1599_BREAST 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 HCC1599_BREAST 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 HCC1599_BREAST 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ANKK1 p.K347T 11 113269731 113269731 HCC1599_BREAST 37 Missense_Mutation SNP A C uc001pny.2 Hybrid_Cap... view
AXIN1 p.L202V 16 396422 396422 HCC1599_BREAST 37 Missense_Mutation SNP G C uc002cgp.1 AXIN1_uc002cgq.... Hybrid_Cap... view
BRCA2 p.K1517fs 13 32913042 32913051 HCC1599_BREAST 37 Frame_Shift_Del Del AAGAA... - rs80359458;rs80358690 uc001uub.1 Hybrid_Cap...
BRIP1 p.S861C 17 59763520 59763520 HCC1599_BREAST 37 Missense_Mutation SNP G C uc002izk.1 BRIP1_uc002izl.... Hybrid_Cap... view
CACNB2 10 18828721 18828722 HCC1599_BREAST 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CIT p.A1276T 12 120158297 120158297 HCC1599_BREAST 37 Missense_Mutation SNP C T uc001txj.1 CIT_uc001txh.1_... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC1599_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CRTC1 p.S585fs 19 18887992 18887993 HCC1599_BREAST 37 Frame_Shift_Ins Ins - C uc010ebv.2 CRTC1_uc002nkb.... Hybrid_Cap...
CSMD3 p.Q1927K 8 113418783 113418783 HCC1599_BREAST 37 Missense_Mutation SNP G T uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
DBN1 p.R24T 5 176899141 176899141 HCC1599_BREAST 37 Missense_Mutation SNP C G uc003mgx.2 DBN1_uc003mgy.2... Hybrid_Cap... view
DIP2C p.A586E 10 430086 430086 HCC1599_BREAST 37 Missense_Mutation SNP G T uc001ifp.2 DIP2C_uc009xhj.... Hybrid_Cap... view
EP300 22 41574970 41574972 HCC1599_BREAST 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
ETV5 p.D494H 3 185766607 185766607 HCC1599_BREAST 37 Missense_Mutation SNP C G uc003fpy.2 ETV5_uc003fpz.2... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 HCC1599_BREAST 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLNA p.G2218D X 153580665 153580665 HCC1599_BREAST 37 Missense_Mutation SNP C T uc004fkk.2 FLNA_uc004fki.2... Hybrid_Cap... view
FLT4 5 180035183 180035185 HCC1599_BREAST 37 Intron Del AGT - uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap...
FOXP1 3 71008341 71008342 HCC1599_BREAST 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
FUS p.K313Q 16 31200545 31200545 HCC1599_BREAST 37 Missense_Mutation SNP A C uc002ebi.2 FUS_uc002ebf.2_... Hybrid_Cap... view
GPR112 p.K2396E X 135443655 135443655 HCC1599_BREAST 37 Missense_Mutation SNP A G uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC1599_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRAMD1B p.P615L 11 123485477 123485477 HCC1599_BREAST 37 Missense_Mutation SNP C T uc001pyw.2 GRAMD1B_uc001py... Hybrid_Cap... view
GRIA3 X 122318386 122318387 HCC1599_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
ILK 11 6630029 6630029 HCC1599_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 HCC1599_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 HCC1599_BREAST 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 HCC1599_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC1599_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 HCC1599_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K6 p.R222H 1 27690725 27690725 HCC1599_BREAST 37 Missense_Mutation SNP C T rs67952423 uc001bny.1 MAP3K6_uc009vsw... Hybrid_Cap... view
MAPK14 6 36076345 36076354 HCC1599_BREAST 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MYST3 p.Y1780C 8 41790399 41790399 HCC1599_BREAST 37 Missense_Mutation SNP T C rs61753681 uc010lxb.2 MYST3_uc010lxc.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 HCC1599_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC1599_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 HCC1599_BREAST 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPR1 1 153665919 153665920 HCC1599_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 HCC1599_BREAST 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NTRK1 p.R452C 1 156844800 156844800 HCC1599_BREAST 37 Missense_Mutation SNP C T rs34900547 uc001fqh.1 NTRK1_uc001fqf.... Hybrid_Cap... view
NUAK1 p.E475Q 12 106461143 106461143 HCC1599_BREAST 37 Missense_Mutation SNP C G uc001tlj.1 Hybrid_Cap... view
NUP214 9 134067556 134067557 HCC1599_BREAST 37 Intron Ins - T rs66652901 uc004cag.2 NUP214_uc004cah... Hybrid_Cap...
PAPPA 9 119158922 119158922 HCC1599_BREAST 37 3'UTR SNP T C uc004bjn.2 PAPPA_uc011lxq.... Hybrid_Cap... view
PCM1 p.Y1176C 8 17827200 17827200 HCC1599_BREAST 37 Missense_Mutation SNP A G uc003wyi.3 PCM1_uc011kyh.1... Hybrid_Cap... view
PDE4DIP p.Q1665fs 1 144873963 144873963 HCC1599_BREAST 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 HCC1599_BREAST 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIM1 6 37138268 37138268 HCC1599_BREAST 37 5'UTR SNP C G uc003onk.2 PIM1_uc011dtw.1... Hybrid_Cap... view
PREX2 8 69143713 69143714 HCC1599_BREAST 37 3'UTR Del TT - uc003xxv.1 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 HCC1599_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 HCC1599_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
REM1 p.R244H 20 30072067 30072067 HCC1599_BREAST 37 Missense_Mutation SNP G A uc002wwa.2 NCRNA00028_uc01... Hybrid_Cap... view
RFC4 p.E316* 3 186507981 186507981 HCC1599_BREAST 37 Nonsense_Mutation SNP C A uc003fqz.2 RFC4_uc011bsc.1... Hybrid_Cap... view
STAT5A 17 40462797 40462798 HCC1599_BREAST 37 3'UTR Del TG - uc002hzj.1 STAT5A_uc010cya... Hybrid_Cap...
TEC 4 48139307 48139310 HCC1599_BREAST 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TESK2 p.G11A 1 45923426 45923426 HCC1599_BREAST 37 Missense_Mutation SNP C G uc001cns.1 TESK2_uc009vxr.... Hybrid_Cap... view
TNRC6B p.Q1328del 22 40697177 40697179 HCC1599_BREAST 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TOP2B p.L1007fs 3 25661374 25661380 HCC1599_BREAST 37 Frame_Shift_Del Del AGTTT... - uc003cdj.2 TOP2B_uc011awn.... Hybrid_Cap...
TP53 p.V225_splice 17 7577610 7577610 HCC1599_BREAST 37 Splice_Site_SNP SNP T A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 HCC1599_BREAST 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TSC1 p.D404Y 9 135786011 135786011 HCC1599_BREAST 37 Missense_Mutation SNP C A rs118203502 uc004cca.2 TSC1_uc004ccb.3... Hybrid_Cap... view
TTN p.G17182S 2 179457598 179457598 HCC1599_BREAST 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 HCC1599_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
YAP1 p.D383A 11 102094468 102094468 HCC1599_BREAST 37 Missense_Mutation SNP A C uc001pgt.2 YAP1_uc001pgs.2... Hybrid_Cap... view