Annotation Summary for Cell Line: HCC1806  

Cell line primary name: HCC1806
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: SILOS_p_NCLE_RNA9_HG-U133_Plus_2_A05_523512
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_B05_410888
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC1806

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 HCC1806_BREAST 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 HCC1806_BREAST 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS18 p.S1187A 16 77317960 77317960 HCC1806_BREAST 37 Missense_Mutation SNP A C uc002ffc.3 Hybrid_Cap... view
AKAP9 p.1335_1336insQ 7 91652178 91652179 HCC1806_BREAST 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ANKK1 11 113271085 113271085 HCC1806_BREAST 37 3'UTR SNP C A uc001pny.2 Hybrid_Cap... view
ATP10A p.G1328A 15 25925005 25925005 HCC1806_BREAST 37 Missense_Mutation SNP C G uc010ayu.2 Hybrid_Cap... view
BRD2 p.K791E 6 32948238 32948238 HCC1806_BREAST 37 Missense_Mutation SNP A G uc010juh.2 BRD2_uc003ocn.3... Hybrid_Cap... view
CAMK1G p.V207I 1 209781262 209781262 HCC1806_BREAST 37 Missense_Mutation SNP G A uc001hhd.2 CAMK1G_uc001hhf... Hybrid_Cap... view
CAMKK2 p.P351L 12 121691131 121691131 HCC1806_BREAST 37 Missense_Mutation SNP G A uc001tzu.2 CAMKK2_uc001tzt... Hybrid_Cap... view
CARD10 p.L290P 22 37906259 37906259 HCC1806_BREAST 37 Missense_Mutation SNP A G uc003asx.1 CARD10_uc003ast... Hybrid_Cap... view
CARD10 p.KE272del 22 37906309 37906314 HCC1806_BREAST 37 In_Frame_Del Del CTCCT... - uc003asx.1 CARD10_uc003ast... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 HCC1806_BREAST 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CLPTM1L 5 1318340 1318340 HCC1806_BREAST 37 3'UTR SNP T C rs112703733 uc003jch.2 CLPTM1L_uc003jc... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC1806_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN5 p.Q1074* 11 100226868 100226868 HCC1806_BREAST 37 Nonsense_Mutation SNP C T uc001pga.2 CNTN5_uc001pgb.... Hybrid_Cap... view
CPAMD8 p.G1230R 19 17036006 17036006 HCC1806_BREAST 37 Missense_Mutation SNP C G uc002nfb.2 Hybrid_Cap... view
CUBN p.S2652* 10 16946072 16946072 HCC1806_BREAST 37 Nonsense_Mutation SNP G C uc001ioo.2 CUBN_uc009xjq.1... Hybrid_Cap... view
CYLD 16 50820672 50820673 HCC1806_BREAST 37 Intron Ins - A rs117241863 uc002egp.1 CYLD_uc002ego.2... Hybrid_Cap...
CYP3A4 p.S501G 7 99355767 99355767 HCC1806_BREAST 37 Missense_Mutation SNP T C uc003urv.1 CYP3A4_uc003urw... Hybrid_Cap... view
DDR2 1 162750211 162750211 HCC1806_BREAST 37 3'UTR Del T - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DIP2C p.N1381S 10 329364 329364 HCC1806_BREAST 37 Missense_Mutation SNP T C uc001ifp.2 Hybrid_Cap... view
DYRK1A 21 38884966 38884967 HCC1806_BREAST 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EDN1 6 12290729 12290729 HCC1806_BREAST 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EEF2K 16 22236982 22236982 HCC1806_BREAST 37 5'UTR SNP G A uc002dki.2 EEF2K_uc002dkh.... Hybrid_Cap... view
ETV1 7 14028708 14028708 HCC1806_BREAST 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FLI1 11 128638217 128638217 HCC1806_BREAST 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 HCC1806_BREAST 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FN1 2 216244182 216244185 HCC1806_BREAST 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FOXP1 3 71008341 71008342 HCC1806_BREAST 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
FOXP1 3 71019824 71019824 HCC1806_BREAST 37 Intron SNP T C uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap... view
GLG1 16 74486992 74486992 HCC1806_BREAST 37 Intron SNP G C uc002fcx.2 GLG1_uc002fcy.3... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC1806_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GPR112 p.L2951P X 135488048 135488048 HCC1806_BREAST 37 Missense_Mutation SNP T C uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap... view
HIPK4 p.V450A 19 40886549 40886549 HCC1806_BREAST 37 Missense_Mutation SNP A G uc002onp.2 Hybrid_Cap... view
HSP90B1 12 104341645 104341648 HCC1806_BREAST 37 3'UTR Del ACTG - rs2307842 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 HCC1806_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INPP4B p.D847E 4 143003285 143003285 HCC1806_BREAST 37 Missense_Mutation SNP G C uc003iix.3 INPP4B_uc003iiw... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 HCC1806_BREAST 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 HCC1806_BREAST 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
MAF 16 79628537 79628537 HCC1806_BREAST 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 HCC1806_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC1806_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 HCC1806_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K5 p.988_989insD 6 136913666 136913667 HCC1806_BREAST 37 In_Frame_Ins Ins - GTC uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MAPK14 6 36076345 36076354 HCC1806_BREAST 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MFSD4 1 205569815 205569815 HCC1806_BREAST 37 3'UTR SNP T C uc001hcv.3 MFSD4_uc010prk.... Hybrid_Cap... view
MMP8 p.Q251E 11 102589178 102589178 HCC1806_BREAST 37 Missense_Mutation SNP G C uc001phe.2 MMP8_uc010rut.1... Hybrid_Cap... view
MSI2 17 55709379 55709380 HCC1806_BREAST 37 Intron Ins - A rs60931600;rs28700576 uc002iuz.1 MSI2_uc010wnm.1... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 HCC1806_BREAST 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 HCC1806_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC1806_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NF2 22 30079270 30079270 HCC1806_BREAST 37 Intron SNP T C uc003age.3 NF2_uc003afy.3_... Hybrid_Cap... view
NLRP6 p.K688del 11 281785 281787 HCC1806_BREAST 37 In_Frame_Del Del AGA - uc010qvs.1 NLRP6_uc010qvt.... Hybrid_Cap...
NPR1 1 153665919 153665920 HCC1806_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NPR2 9 35809551 35809552 HCC1806_BREAST 37 3'UTR Ins - C rs79548753 uc003zyd.2 NPR2_uc010mlb.2... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 HCC1806_BREAST 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUDT11 X 51234559 51234559 HCC1806_BREAST 37 3'UTR SNP C G uc010njt.2 Hybrid_Cap... view
PAX3 2 223066017 223066018 HCC1806_BREAST 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 HCC1806_BREAST 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.Q1665fs 1 144873963 144873963 HCC1806_BREAST 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 HCC1806_BREAST 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGR 11 100933598 100933599 HCC1806_BREAST 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 HCC1806_BREAST 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2G 12 18800990 18800990 HCC1806_BREAST 37 3'UTR Del A - rs16914368 uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3R4 3 130398127 130398128 HCC1806_BREAST 37 3'UTR Ins - AACTA uc003enj.2 Hybrid_Cap...
PNMT p.R196W 17 37826379 37826379 HCC1806_BREAST 37 Missense_Mutation SNP C T uc002hsi.1 Hybrid_Cap... view
PREX2 p.E1241V 8 69033282 69033282 HCC1806_BREAST 37 Missense_Mutation SNP A T uc003xxv.1 Hybrid_Cap... view
PRKCZ 1 2116449 2116449 HCC1806_BREAST 37 3'UTR SNP G T uc001aiq.2 PRKCZ_uc001air.... Hybrid_Cap... view
PRKD3 2 37480319 37480320 HCC1806_BREAST 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 HCC1806_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAPGEF2 4 160189200 160189201 HCC1806_BREAST 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RARB 3 25470086 25470086 HCC1806_BREAST 37 Intron SNP G C uc011awl.1 RARB_uc003cdi.1... Hybrid_Cap... view
RBPJ 4 26431944 26431945 HCC1806_BREAST 37 Intron Ins - A rs7676740 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 HCC1806_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
ROBO1 p.N746N 3 78710262 78710262 HCC1806_BREAST 37 Silent SNP G A rs35607315 uc003dqe.2 ROBO1_uc003dqb.... Hybrid_Cap... view
ROBO2 3 77666937 77666937 HCC1806_BREAST 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RUNX2 p.S32R 6 45390367 45390367 HCC1806_BREAST 37 Missense_Mutation SNP C G uc011dvx.1 RUNX2_uc011dvy.... Hybrid_Cap... view
SERPINA12 p.E35K 14 94964632 94964632 HCC1806_BREAST 37 Missense_Mutation SNP C T uc001ydj.2 Hybrid_Cap... view
STK31 7 23872024 23872025 HCC1806_BREAST 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STRADB 2 202319488 202319492 HCC1806_BREAST 37 5'UTR Del GAAAG - uc002uyd.3 Hybrid_Cap...
SULF1 8 70550577 70550577 HCC1806_BREAST 37 Intron SNP G A rs77213519 uc010lza.1 SULF1_uc003xyd.... Hybrid_Cap... view
TCF12 p.A482V 15 57545644 57545644 HCC1806_BREAST 37 Missense_Mutation SNP C T uc002aea.2 TCF12_uc010ugm.... Hybrid_Cap... view
TCF21 6 134210497 134210498 HCC1806_BREAST 37 5'UTR Ins - TCTC rs35199378 uc003qei.3 TCF21_uc003qej.... Hybrid_Cap...
TG 8 134147132 134147132 HCC1806_BREAST 37 3'UTR SNP A G uc003ytw.2 TG_uc010mdw.2_3... Hybrid_Cap... view
TGFB2 1 218519928 218519929 HCC1806_BREAST 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TLK1 2 171850178 171850179 HCC1806_BREAST 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TMEM123 11 102269461 102269461 HCC1806_BREAST 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 HCC1806_BREAST 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP63 3 189507518 189507519 HCC1806_BREAST 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TTN 2 179391639 179391640 HCC1806_BREAST 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.E27695Q 2 179416840 179416840 HCC1806_BREAST 37 Missense_Mutation SNP C G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.V25746A 2 179425918 179425918 HCC1806_BREAST 37 Missense_Mutation SNP A G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.S18943R 2 179449938 179449938 HCC1806_BREAST 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TYRO3 15 41870703 41870703 HCC1806_BREAST 37 3'UTR SNP T C uc001zof.1 Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 HCC1806_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...