Annotation Summary for Cell Line: HCC202  

Cell line primary name: HCC202
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: MAKER_p_NCLE_RNA7_HG-U133_Plus_2_G10_454732
SNP arrays: LOBBY_p_NCLE_DNAAffy6_GenomeWideSNP_6_B12_437318
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC202

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 HCC202_BREAST 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM17 2 9630245 9630245 HCC202_BREAST 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAMTS19 5 129072947 129072947 HCC202_BREAST 37 3'UTR SNP A G uc003kvb.1 ADAMTS19_uc010j... Hybrid_Cap... view
AIFM1 p.Q479fs X 129267296 129267299 HCC202_BREAST 37 Frame_Shift_Del Del TGAC - uc004evg.2 AIFM1_uc011mur.... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 HCC202_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 p.T495fs 4 113352188 113352189 HCC202_BREAST 37 Frame_Shift_Del Del AG - uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 HCC202_BREAST 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
APAF1 p.L453F 12 99060130 99060130 HCC202_BREAST 37 Missense_Mutation SNP C T uc001tfz.2 APAF1_uc001tfy.... Hybrid_Cap... view
AURKC 19 57742494 57742507 HCC202_BREAST 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCR 22 23631813 23631814 HCC202_BREAST 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CAMK4 p.V196L 5 110784862 110784862 HCC202_BREAST 37 Missense_Mutation SNP G C uc011cvj.1 CAMK4_uc003kpf.... Hybrid_Cap... view
CARD10 p.KE272del 22 37906309 37906314 HCC202_BREAST 37 In_Frame_Del Del CTCCT... - uc003asx.1 CARD10_uc003ast... Hybrid_Cap...
CDH3 p.Q347H 16 68716249 68716249 HCC202_BREAST 37 Missense_Mutation SNP G C uc002ewf.2 CDH3_uc010vli.1... Hybrid_Cap... view
CDK18 1 205492116 205492116 HCC202_BREAST 37 Intron SNP C T uc001hcr.2 CDK18_uc009xbk.... Hybrid_Cap... view
CDK18 p.R306S 1 205497020 205497020 HCC202_BREAST 37 Missense_Mutation SNP G T uc001hcr.2 CDK18_uc001hcp.... Hybrid_Cap... view
CHD8 p.G1178_splice 14 21868773 21868773 HCC202_BREAST 37 Splice_Site_SNP SNP T A uc001was.1 CHD8_uc001war.1... Hybrid_Cap... view
CHD9 p.2164_2165SS>S 16 53338410 53338412 HCC202_BREAST 37 In_Frame_Del Del TTC - uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC202_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN5 11 99426937 99426937 HCC202_BREAST 37 5'UTR SNP T G uc001pga.2 CNTN5_uc009ywv.... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 HCC202_BREAST 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSNK1E p.K154E 22 38696834 38696834 HCC202_BREAST 37 Missense_Mutation SNP T C uc003avj.2 CSNK1E_uc003avk... Hybrid_Cap... view
DAPK1 p.R1385C 9 90322139 90322139 HCC202_BREAST 37 Missense_Mutation SNP C T uc004apc.2 DAPK1_uc004apd.... Hybrid_Cap... view
DST p.E897Q 6 56504319 56504319 HCC202_BREAST 37 Missense_Mutation SNP C G uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
EIF4E 4 99808137 99808141 HCC202_BREAST 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EIF4G1 p.K833E 3 184041992 184041992 HCC202_BREAST 37 Missense_Mutation SNP A G uc010hxx.2 EIF4G1_uc003fno... Hybrid_Cap... view
EP300 22 41574970 41574972 HCC202_BREAST 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA6 3 97367230 97367231 HCC202_BREAST 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ERCC4 p.A339G 16 14026056 14026056 HCC202_BREAST 37 Missense_Mutation SNP C G uc002dce.2 ERCC4_uc010bva.... Hybrid_Cap... view
ETV1 7 14028708 14028708 HCC202_BREAST 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
EXT1 8 118811807 118811807 HCC202_BREAST 37 3'UTR Del T - uc003yok.1 Hybrid_Cap...
FANCD2 p.Q1150E 3 10128930 10128930 HCC202_BREAST 37 Missense_Mutation SNP C G uc003buw.2 FANCD2_uc003bux... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 HCC202_BREAST 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR2 10 123353420 123353420 HCC202_BREAST 37 5'UTR SNP C A uc010qtj.1 FGFR2_uc010qtg.... Hybrid_Cap... view
FGFR3 4 1809128 1809129 HCC202_BREAST 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 HCC202_BREAST 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNC p.R2142S 7 128493833 128493833 HCC202_BREAST 37 Missense_Mutation SNP A T uc003vnz.3 FLNC_uc003voa.3... Hybrid_Cap... view
FN1 2 216246785 216246787 HCC202_BREAST 37 Intron Del AAG - rs113225940 uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FYN 6 111982810 111982810 HCC202_BREAST 37 3'UTR SNP C T uc003pvj.2 FYN_uc003pvi.2_... Hybrid_Cap... view
FYN 6 111982816 111982816 HCC202_BREAST 37 3'UTR SNP C T uc003pvj.2 FYN_uc003pvi.2_... Hybrid_Cap... view
FYN p.E535K 6 111982953 111982953 HCC202_BREAST 37 Missense_Mutation SNP C T uc003pvj.2 FYN_uc003pvi.2_... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC202_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 HCC202_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HDAC4 2 240011637 240011637 HCC202_BREAST 37 Intron SNP C T uc002vyk.3 HDAC4_uc010fyz.... Hybrid_Cap... view
HIF1A p.M370T 14 62203684 62203684 HCC202_BREAST 37 Missense_Mutation SNP T C uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap... view
HMGA2 12 66309036 66309036 HCC202_BREAST 37 3'UTR SNP C A uc001ssu.1 HMGA2_uc001ssw.... Hybrid_Cap... view
HNF1A p.I449M 12 121435314 121435314 HCC202_BREAST 37 Missense_Mutation SNP C G uc010szn.1 HNF1A_uc001tzf.... Hybrid_Cap... view
HOXC11 p.E17V 12 54367075 54367075 HCC202_BREAST 37 Missense_Mutation SNP A T uc001sem.2 Hybrid_Cap... view
IGF1R 15 99192790 99192790 HCC202_BREAST 37 5'UTR SNP A C uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap... view
ILK 11 6630029 6630029 HCC202_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
KLK7 19 51480672 51480675 HCC202_BREAST 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LRRC7 p.N902I 1 70504326 70504326 HCC202_BREAST 37 Missense_Mutation SNP A T uc001dep.2 LRRC7_uc009wbg.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 HCC202_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 HCC202_BREAST 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC202_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K11 p.D595E 11 65373278 65373278 HCC202_BREAST 37 Missense_Mutation SNP A T uc001oew.2 MAP3K11_uc001oe... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 HCC202_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K2 p.S228fs 2 128081812 128081813 HCC202_BREAST 37 Frame_Shift_Del Del CT - uc002toj.1 MAP3K2_uc010flz... Hybrid_Cap...
MAP3K6 p.K1125del 1 27683230 27683232 HCC202_BREAST 37 In_Frame_Del Del CTT - uc001bny.1 MAP3K6_uc009vsw... Hybrid_Cap...
MAPK7 p.M704V 17 19285726 19285726 HCC202_BREAST 37 Missense_Mutation SNP A G uc002gvn.2 MAPK7_uc002gvo.... Hybrid_Cap... view
MAPKAPK2 p.V118L 1 206902127 206902127 HCC202_BREAST 37 Missense_Mutation SNP G T uc001hem.1 MAPKAPK2_uc001h... Hybrid_Cap... view
MAST2 p.E1663* 1 46501328 46501328 HCC202_BREAST 37 Nonsense_Mutation SNP G T uc001cov.2 MAST2_uc001cow.... Hybrid_Cap... view
MAST4 p.S2168T 5 66462077 66462077 HCC202_BREAST 37 Missense_Mutation SNP G C uc003jut.1 MAST4_uc003juw.... Hybrid_Cap... view
MET 7 116381154 116381154 HCC202_BREAST 37 Intron SNP T G uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MET p.D1198H 7 116422057 116422057 HCC202_BREAST 37 Missense_Mutation SNP G C rs45541232 uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MLKL 16 74706330 74706330 HCC202_BREAST 37 3'UTR SNP G A uc002fdb.2 MLKL_uc002fdc.2... Hybrid_Cap... view
MLL3 p.E1240* 7 151904508 151904508 HCC202_BREAST 37 Nonsense_Mutation SNP C A uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MLLT6 17 36881873 36881873 HCC202_BREAST 37 3'UTR Del C - uc002hqi.3 MLLT6_uc002hqk.... Hybrid_Cap...
MYCN 2 16082160 16082160 HCC202_BREAST 37 5'UTR SNP C T uc002rci.2 MYCNOS_uc002rch... Hybrid_Cap... view
MYH9 p.K30* 22 36745194 36745194 HCC202_BREAST 37 Nonsense_Mutation SNP T A uc003apg.2 MYH9_uc003api.1... Hybrid_Cap... view
MYLK 3 123332875 123332876 HCC202_BREAST 37 3'UTR Ins - TT rs35930843;rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 HCC202_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC202_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEDD8 p.E14D 14 24687614 24687614 HCC202_BREAST 37 Missense_Mutation SNP C G uc001wnn.2 CHMP4A_uc001wnj... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 HCC202_BREAST 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK8 p.D471N 17 27066213 27066213 HCC202_BREAST 37 Missense_Mutation SNP G A uc002hcp.2 Hybrid_Cap... view
NF1 p.S465_splice 17 29541468 29541468 HCC202_BREAST 37 Splice_Site_SNP SNP G A uc002hgg.2 NF1_uc002hge.1_... Hybrid_Cap... view
NLRP3 1 247611982 247611982 HCC202_BREAST 37 3'UTR Del C - uc001icr.2 NLRP3_uc001ics.... Hybrid_Cap...
NOTCH4 p.12_16LLLLL>L 6 32191659 32191670 HCC202_BREAST 37 In_Frame_Del Del AGCAG... - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NPM1 5 170837605 170837605 HCC202_BREAST 37 3'UTR SNP G A rs1059404 uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap... view
NPR1 1 153665919 153665920 HCC202_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 HCC202_BREAST 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAPPA p.A606P 9 118974109 118974109 HCC202_BREAST 37 Missense_Mutation SNP G C uc004bjn.2 PAPPA_uc011lxp.... Hybrid_Cap... view
PAPPA p.L828P 9 118997667 118997667 HCC202_BREAST 37 Missense_Mutation SNP T C uc004bjn.2 PAPPA_uc011lxp.... Hybrid_Cap... view
PAPPA p.F1084L 9 119093627 119093627 HCC202_BREAST 37 Missense_Mutation SNP T G uc004bjn.2 PAPPA_uc011lxp.... Hybrid_Cap... view
PAX3 2 223158653 223158653 HCC202_BREAST 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 HCC202_BREAST 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 HCC202_BREAST 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDGFRA 4 55131286 55131286 HCC202_BREAST 37 Intron SNP C T uc003han.3 PDGFRA_uc003haa... Hybrid_Cap... view
PEX5L 3 179754390 179754390 HCC202_BREAST 37 5'UTR SNP T C uc003fki.1 PEX5L_uc003fkj.... Hybrid_Cap... view
PGGT1B 5 114548071 114548072 HCC202_BREAST 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PIK3CA p.E545K 3 178936091 178936091 HCC202_BREAST 37 Missense_Mutation SNP G A rs104886003 uc003fjk.2 Hybrid_Cap... view
PIK3CA p.L866F 3 178947162 178947162 HCC202_BREAST 37 Missense_Mutation SNP G C uc003fjk.2 Hybrid_Cap... view
PKMYT1 p.S334fs 16 3024396 3024397 HCC202_BREAST 37 Frame_Shift_Del Del AG - uc002csn.2 PKMYT1_uc010uwn... Hybrid_Cap...
PPARGC1A p.R625T 4 23814668 23814668 HCC202_BREAST 37 Missense_Mutation SNP C G uc003gqs.2 PPARGC1A_uc003g... Hybrid_Cap... view
PRKD3 2 37480319 37480320 HCC202_BREAST 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 HCC202_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPRD p.Q638H 9 8500968 8500968 HCC202_BREAST 37 Missense_Mutation SNP C G uc003zkk.2 PTPRD_uc003zkp.... Hybrid_Cap... view
RAF1 p.D186V 3 12650289 12650289 HCC202_BREAST 37 Missense_Mutation SNP T A uc003bxf.3 RAF1_uc011aut.1... Hybrid_Cap... view
RAP1GDS1 p.L539* 4 99358136 99358136 HCC202_BREAST 37 Nonsense_Mutation SNP T G uc003htw.3 RAP1GDS1_uc003h... Hybrid_Cap... view
RBBP8 18 20606214 20606215 HCC202_BREAST 37 3'UTR Del AG - uc002kua.2 RBBP8_uc002ktw.... Hybrid_Cap...
RCBTB2 p.S303F 13 49084798 49084798 HCC202_BREAST 37 Missense_Mutation SNP G A uc010tgg.1 RCBTB2_uc001vch... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 HCC202_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RICTOR p.S1031C 5 38952333 38952333 HCC202_BREAST 37 Missense_Mutation SNP G C uc003jlo.2 RICTOR_uc003jlp... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 HCC202_BREAST 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KC1 p.N329K 1 213349778 213349778 HCC202_BREAST 37 Missense_Mutation SNP C G uc010ptr.1 RPS6KC1_uc001hk... Hybrid_Cap... view
RPS6KL1 14 75373626 75373627 HCC202_BREAST 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
RUNX1T1 p.R277R 8 93004062 93004062 HCC202_BREAST 37 Silent SNP G T uc011lgi.1 RUNX1T1_uc003yf... Hybrid_Cap... view
RUNX1T1 8 93074908 93074908 HCC202_BREAST 37 Intron SNP C T uc011lgi.1 RUNX1T1_uc003yf... Hybrid_Cap... view
STK31 7 23872024 23872025 HCC202_BREAST 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STRADA 17 61781331 61781332 HCC202_BREAST 37 Intron Ins - AGAACC rs66701913 uc002jbm.2 STRADA_uc002jbn... Hybrid_Cap...
TAF1 p.L867R X 70608199 70608199 HCC202_BREAST 37 Missense_Mutation SNP T G uc004dzt.3 BCYRN1_uc011mpt... Hybrid_Cap... view
TEC 4 48139307 48139310 HCC202_BREAST 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TG p.H1509H 8 133931769 133931769 HCC202_BREAST 37 Silent SNP C T uc003ytw.2 TG_uc010mdw.2_S... Hybrid_Cap... view
THBS3 p.V775M 1 155167430 155167430 HCC202_BREAST 37 Missense_Mutation SNP C T uc001fix.2 RAG1AP1_uc010pe... Hybrid_Cap... view
TMEM123 11 102269461 102269461 HCC202_BREAST 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP53 p.T284fs 17 7577086 7577087 HCC202_BREAST 37 Frame_Shift_Del Del TG - uc002gim.2 TP53_uc002gig.1... Hybrid_Cap...
TP63 3 189507518 189507519 HCC202_BREAST 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIM33 1 114940215 114940216 HCC202_BREAST 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRIM42 3 140419819 140419819 HCC202_BREAST 37 3'UTR SNP C A uc003eto.1 Hybrid_Cap... view
TRIO p.V1010I 5 14368970 14368970 HCC202_BREAST 37 Missense_Mutation SNP G A uc003jff.2 TRIO_uc003jfg.2... Hybrid_Cap... view
TTL p.T223A 2 113260550 113260550 HCC202_BREAST 37 Missense_Mutation SNP A G uc002thu.2 TTL_uc010fkm.1_... Hybrid_Cap... view
TTN 2 179391639 179391640 HCC202_BREAST 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.I13914M 2 179478564 179478564 HCC202_BREAST 37 Missense_Mutation SNP G C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.T4833N 2 179594897 179594897 HCC202_BREAST 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
WLS p.A234S 1 68619297 68619297 HCC202_BREAST 37 Missense_Mutation SNP C A uc001dee.2 WLS_uc001def.1_... Hybrid_Cap... view
XPA 9 100437701 100437701 HCC202_BREAST 37 3'UTR SNP C T uc004axr.3 XPA_uc004axs.3_... Hybrid_Cap... view