Annotation Summary for Cell Line: HCC38  

Cell line primary name: HCC38
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: ATCC
Expression arrays: AGENT_p_NCLE_RNA6_HG-U133_Plus_2_F09_436452
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_H06_410918
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC38

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 HCC38_BREAST 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 HCC38_BREAST 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAM32 p.R545_splice 8 39089655 39089655 HCC38_BREAST 37 Splice_Site_SNP SNP G A rs61753547 uc003xmt.3 ADAM32_uc011lch... Hybrid_Cap... view
ADAMTS19 p.L360I 5 128863450 128863450 HCC38_BREAST 37 Missense_Mutation SNP C A uc003kvb.1 ADAMTS19_uc003k... Hybrid_Cap... view
AKAP6 p.E1702Q 14 33292123 33292123 HCC38_BREAST 37 Missense_Mutation SNP G C uc001wrq.2 Hybrid_Cap... view
AKAP9 p.1335_1336insQ 7 91652178 91652179 HCC38_BREAST 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALDH7A1 5 125930950 125930950 HCC38_BREAST 37 5'UTR SNP C T uc003ktx.2 ALDH7A1_uc003kt... Hybrid_Cap... view
ALPK1 4 113347609 113347610 HCC38_BREAST 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 HCC38_BREAST 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALS2 2 202587706 202587707 HCC38_BREAST 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 HCC38_BREAST 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
ATP10A p.G283_splice 15 25971231 25971231 HCC38_BREAST 37 Splice_Site_SNP SNP T A uc010ayu.2 Hybrid_Cap... view
BCR 22 23631813 23631814 HCC38_BREAST 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 HCC38_BREAST 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BRD4 p.K431fs 19 15374278 15374279 HCC38_BREAST 37 Frame_Shift_Ins Ins - CT uc002nar.2 BRD4_uc002nas.2... Hybrid_Cap...
BRIP1 17 59760492 59760492 HCC38_BREAST 37 3'UTR Del A - uc002izk.1 Hybrid_Cap...
CACNB2 10 18828721 18828722 HCC38_BREAST 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CDK11B 1 1654066 1654068 HCC38_BREAST 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC38_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN5 p.V882I 11 100179114 100179114 HCC38_BREAST 37 Missense_Mutation SNP G A uc001pga.2 CNTN5_uc001pfz.... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 HCC38_BREAST 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
DNAH8 p.L643M 6 38754723 38754723 HCC38_BREAST 37 Missense_Mutation SNP T A uc003ooe.1 Hybrid_Cap... view
EIF4E 4 99808137 99808141 HCC38_BREAST 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EPHA6 3 97367230 97367231 HCC38_BREAST 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
FLI1 11 128638217 128638217 HCC38_BREAST 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 HCC38_BREAST 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FOXO3 p.H538Q 6 108985650 108985650 HCC38_BREAST 37 Missense_Mutation SNP C G uc003psk.2 FOXO3_uc003psn.... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC38_BREAST 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 HCC38_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 HCC38_BREAST 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HNF1A 12 121434630 121434631 HCC38_BREAST 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HOXD10 p.T255A 2 176983699 176983699 HCC38_BREAST 37 Missense_Mutation SNP A G uc002ukj.2 Hybrid_Cap... view
IKBKB p.A360S 8 42174375 42174375 HCC38_BREAST 37 Missense_Mutation SNP G T uc003xow.1 IKBKB_uc003xov.... Hybrid_Cap... view
ILK 11 6630029 6630029 HCC38_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
KLK7 19 51480672 51480675 HCC38_BREAST 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LMTK2 p.V624M 7 97821647 97821647 HCC38_BREAST 37 Missense_Mutation SNP G A rs34628253 uc003upd.1 Hybrid_Cap... view
MAF 16 79628537 79628537 HCC38_BREAST 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAMDC4 p.P244T 9 139748722 139748722 HCC38_BREAST 37 Missense_Mutation SNP C A uc004cjs.2 MAMDC4_uc011mej... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 HCC38_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 HCC38_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 HCC38_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MLL3 p.Y816fs 7 151945071 151945072 HCC38_BREAST 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MMP8 p.D425H 11 102584506 102584506 HCC38_BREAST 37 Missense_Mutation SNP C G uc001phe.2 MMP8_uc010rut.1... Hybrid_Cap... view
MTUS2 13 30002822 30002822 HCC38_BREAST 37 Intron SNP C A rs112023852 uc001usl.3 MTUS2_uc001usm.... Hybrid_Cap... view
MYO3A p.TE24del 10 26241109 26241114 HCC38_BREAST 37 In_Frame_Del Del ACTGA... - uc001isn.2 MYO3A_uc009xko.... Hybrid_Cap...
MYST3 p.P535S 8 41806877 41806877 HCC38_BREAST 37 Missense_Mutation SNP G A uc010lxb.2 MYST3_uc010lxc.... Hybrid_Cap... view
MYST4 p.EEE1366del 10 76788660 76788668 HCC38_BREAST 37 In_Frame_Del Del GAAGA... - uc001jwn.1 MYST4_uc001jwo.... Hybrid_Cap...
NCAM1 11 112832307 112832308 HCC38_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC38_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279864 46279866 HCC38_BREAST 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 HCC38_BREAST 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPR1 1 153665919 153665920 HCC38_BREAST 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 HCC38_BREAST 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NRK p.S424C X 105152903 105152903 HCC38_BREAST 37 Missense_Mutation SNP A T uc004emd.2 NRK_uc010npc.1_... Hybrid_Cap... view
ODZ1 p.L342F X 123805675 123805675 HCC38_BREAST 37 Missense_Mutation SNP C G uc010nqy.2 ODZ1_uc011muj.1... Hybrid_Cap... view
P2RX7 p.F188F 12 121603190 121603190 HCC38_BREAST 37 Silent SNP C T uc001tzm.2 P2RX7_uc001tzn.... Hybrid_Cap... view
PAX3 2 223158653 223158653 HCC38_BREAST 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDGFRB p.N718Y 5 149502636 149502636 HCC38_BREAST 37 Missense_Mutation SNP T A rs35322465 uc003lro.2 PDGFRB_uc010jhd... Hybrid_Cap... view
PIK3C2G p.P129del 12 18435399 18435401 HCC38_BREAST 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CA p.W386L 3 178927394 178927394 HCC38_BREAST 37 Missense_Mutation SNP G T uc003fjk.2 Hybrid_Cap... view
PRKAA1 5 40762755 40762755 HCC38_BREAST 37 3'UTR SNP A T uc003jmb.2 PRKAA1_uc003jmc... Hybrid_Cap... view
PRKD3 2 37480319 37480320 HCC38_BREAST 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 HCC38_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG1 10 52751088 52751089 HCC38_BREAST 37 5'UTR Ins - GCT rs67900156;rs71029335 uc001jjm.2 PRKG1_uc010qhp.... Hybrid_Cap...
REM1 p.E234Q 20 30072036 30072036 HCC38_BREAST 37 Missense_Mutation SNP G C rs61759895 uc002wwa.2 NCRNA00028_uc01... Hybrid_Cap... view
SORL1 p.HCIP1380del 11 121460807 121460818 HCC38_BREAST 37 In_Frame_Del Del CCACT... - uc001pxx.2 SORL1_uc010rzp.... Hybrid_Cap...
STK31 7 23872024 23872025 HCC38_BREAST 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TGFB2 1 218519928 218519929 HCC38_BREAST 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
THBS3 p.S36F 1 155176170 155176170 HCC38_BREAST 37 Missense_Mutation SNP G A uc001fix.2 RAG1AP1_uc010pe... Hybrid_Cap... view
TMEM123 11 102269398 102269398 HCC38_BREAST 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TOP1 p.K326R 20 39728697 39728697 HCC38_BREAST 37 Missense_Mutation SNP A G uc002xjl.2 Hybrid_Cap... view
TP53 p.R273L 17 7577120 7577120 HCC38_BREAST 37 Missense_Mutation SNP C A rs28934576 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIP11 p.K1213N 14 92470681 92470681 HCC38_BREAST 37 Missense_Mutation SNP C A uc001xzy.2 TRIP11_uc010auf... Hybrid_Cap... view
TRPS1 8 116635872 116635873 HCC38_BREAST 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN p.T32460M 2 179396259 179396259 HCC38_BREAST 37 Missense_Mutation SNP G A rs56001826 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 HCC38_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WEE1 11 9597412 9597412 HCC38_BREAST 37 Intron SNP T C uc001mhs.2 WEE1_uc001mht.2... Hybrid_Cap... view