Annotation Summary for Cell Line: HCC-78  

Cell line primary name: HCC-78
Cell line aliases:
Gender: M
Site Primary: lung
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: DSMZ
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_C05_296046
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_C10_293346
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in HCC-78

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 HCC78_LUNG 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADRBK1 p.E88K 11 67046742 67046742 HCC78_LUNG 37 Missense_Mutation SNP G A uc009yrn.1 ADRBK1_uc009yrm... Hybrid_Cap... view
AKAP12 p.E1075Q 6 151672749 151672749 HCC78_LUNG 37 Missense_Mutation SNP G C uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 HCC78_LUNG 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALK p.R753Q 2 29462643 29462643 HCC78_LUNG 37 Missense_Mutation SNP C T uc002rmy.2 Hybrid_Cap... view
ALPK2 p.1388_1389FF>F 18 56203253 56203255 HCC78_LUNG 37 In_Frame_Del Del AAG - uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALS2 p.L392Q 2 202622421 202622421 HCC78_LUNG 37 Missense_Mutation SNP A T uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap... view
ASPH p.S732L 8 62416000 62416000 HCC78_LUNG 37 Missense_Mutation SNP G A uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap... view
ASPH p.A264_splice 8 62550924 62550925 HCC78_LUNG 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
BAT3 p.Q1095* 6 31607297 31607297 HCC78_LUNG 37 Nonsense_Mutation SNP G A uc003nvg.3 BAT3_uc003nvf.3... Hybrid_Cap... view
BCL11A p.G253S 2 60689290 60689290 HCC78_LUNG 37 Missense_Mutation SNP C T uc002sae.1 BCL11A_uc002sab... Hybrid_Cap... view
BCR 22 23631813 23631814 HCC78_LUNG 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 HCC78_LUNG 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BMP4 14 54416601 54416602 HCC78_LUNG 37 3'UTR Ins - A rs74495140;rs76335800 uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap...
CACNB2 10 18828669 18828670 HCC78_LUNG 37 3'UTR Ins - C rs34022725;rs58830289 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CAMK2A 5 149602223 149602224 HCC78_LUNG 37 3'UTR Del AC - uc003lrt.2 CAMK2A_uc003lrs... Hybrid_Cap...
CDC42 p.R192L 1 22413313 22413313 HCC78_LUNG 37 Missense_Mutation SNP G T uc010odr.1 CDC42_uc009vqg.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 HCC78_LUNG 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196673 19196674 HCC78_LUNG 37 Intron Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CPAMD8 p.E1843Q 19 17007027 17007027 HCC78_LUNG 37 Missense_Mutation SNP C G uc002nfb.2 CPAMD8_uc010xpj... Hybrid_Cap... view
CXCL12 10 44873992 44873993 HCC78_LUNG 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DNAH8 p.I2138M 6 38840386 38840386 HCC78_LUNG 37 Missense_Mutation SNP C G uc003ooe.1 Hybrid_Cap... view
ELF4 p.E303K X 129203555 129203555 HCC78_LUNG 37 Missense_Mutation SNP C T uc004evd.3 ELF4_uc004eve.3... Hybrid_Cap... view
EP300 22 41574970 41574972 HCC78_LUNG 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA6 3 97367230 97367231 HCC78_LUNG 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB6 7 142568771 142568771 HCC78_LUNG 37 3'UTR Del C - uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap...
EPS15 1 51822220 51822220 HCC78_LUNG 37 3'UTR Del A - uc001csq.1 EPS15_uc009vyz.... Hybrid_Cap...
ERN2 16 23724736 23724736 HCC78_LUNG 37 5'UTR SNP C T uc002dma.3 ERN2_uc010bxp.2... Hybrid_Cap... view
ETV1 7 14028708 14028708 HCC78_LUNG 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 HCC78_LUNG 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 HCC78_LUNG 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 HCC78_LUNG 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216246876 216246876 HCC78_LUNG 37 Intron SNP T A uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap... view
GMPS p.E691Q 3 155655470 155655470 HCC78_LUNG 37 Missense_Mutation SNP G C uc003faq.2 GMPS_uc011bom.1... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 HCC78_LUNG 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 HCC78_LUNG 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIN2B p.T1065I 12 13716978 13716978 HCC78_LUNG 37 Missense_Mutation SNP G A uc001rbt.2 Hybrid_Cap... view
GUCY2C 12 14827464 14827466 HCC78_LUNG 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HDLBP 2 242192733 242192733 HCC78_LUNG 37 Intron SNP G A uc002waz.2 HDLBP_uc002wba.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 HCC78_LUNG 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HNRNPH1 p.I321S 5 179044610 179044610 HCC78_LUNG 37 Missense_Mutation SNP A C uc003mkf.3 HNRNPH1_uc011dg... Hybrid_Cap... view
ILK 11 6630029 6630029 HCC78_LUNG 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INSR p.S682W 19 7152923 7152923 HCC78_LUNG 37 Missense_Mutation SNP G C uc002mgd.1 INSR_uc002mge.1... Hybrid_Cap... view
ITPR2 p.D1107H 12 26774199 26774199 HCC78_LUNG 37 Missense_Mutation SNP C G uc001rhg.2 Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 HCC78_LUNG 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDM6A p.S819fs X 44929200 44929201 HCC78_LUNG 37 Frame_Shift_Ins Ins - T uc011mkz.1 KDM6A_uc010nhk.... Hybrid_Cap...
KLK7 19 51480672 51480675 HCC78_LUNG 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LMTK3 p.G931V 19 49001621 49001621 HCC78_LUNG 37 Missense_Mutation SNP C A uc002pjk.2 Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 HCC78_LUNG 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K6 17 67517310 67517310 HCC78_LUNG 37 Intron SNP C G uc002jij.2 MAP2K6_uc002jii... Hybrid_Cap... view
MAP3K1 p.T949del 5 56177849 56177851 HCC78_LUNG 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 HCC78_LUNG 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MGA p.D2317N 15 42042754 42042754 HCC78_LUNG 37 Missense_Mutation SNP G A uc010ucy.1 MGA_uc010ucz.1_... Hybrid_Cap... view
MLL p.S2364C 11 118373698 118373698 HCC78_LUNG 37 Missense_Mutation SNP C G uc001ptb.2 MLL_uc001pta.2_... Hybrid_Cap... view
MRE11A p.S209F 11 94209488 94209488 HCC78_LUNG 37 Missense_Mutation SNP G A uc001peu.2 MRE11A_uc001pev... Hybrid_Cap... view
MYC p.E251K 8 128751214 128751214 HCC78_LUNG 37 Missense_Mutation SNP G A uc003ysi.2 Hybrid_Cap... view
NCAM1 11 112832307 112832308 HCC78_LUNG 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 HCC78_LUNG 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFIA 1 61921185 61921186 HCC78_LUNG 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NIN p.Q1811K 14 51208317 51208317 HCC78_LUNG 37 Missense_Mutation SNP G T uc001wyi.2 NIN_uc001wyj.2_... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881822 50881823 HCC78_LUNG 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR3C1 5 142780419 142780419 HCC78_LUNG 37 Splice_Site_SNP SNP T A uc003lmy.2 NR3C1_uc003lmz.... Hybrid_Cap... view
PAX3 2 223158653 223158653 HCC78_LUNG 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 HCC78_LUNG 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PLK2 5 57755013 57755014 HCC78_LUNG 37 Intron Ins - A rs79105101 uc003jrn.2 PLK2_uc011cql.1... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 HCC78_LUNG 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RASGRF1 p.Y695H 15 79298559 79298559 HCC78_LUNG 37 Missense_Mutation SNP A G uc002beq.2 RASGRF1_uc002be... Hybrid_Cap... view
SMG1 p.A3586G 16 18823314 18823314 HCC78_LUNG 37 Missense_Mutation SNP G C uc002dfm.2 SMG1_uc010bwb.2... Hybrid_Cap... view
SMO p.R576W 7 128850879 128850879 HCC78_LUNG 37 Missense_Mutation SNP C T uc003vor.2 SMO_uc003vos.2_... Hybrid_Cap... view
SPEN p.E2913K 1 16261472 16261472 HCC78_LUNG 37 Missense_Mutation SNP G A uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap... view
SRPK1 p.H36H 6 35858757 35858757 HCC78_LUNG 37 Silent SNP G A uc003olj.2 SRPK1_uc011dtg.... Hybrid_Cap... view
TACC3 4 1739519 1739527 HCC78_LUNG 37 Intron Del GCCAT... - rs114226356 uc003gdo.2 TACC3_uc010ibz.... Hybrid_Cap...
TP53 p.S241F 17 7577559 7577559 HCC78_LUNG 37 Missense_Mutation SNP G A rs28934573 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 HCC78_LUNG 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPS1 8 116635872 116635873 HCC78_LUNG 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 HCC78_LUNG 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 HCC78_LUNG 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZAK p.S518_splice 2 174128472 174128472 HCC78_LUNG 37 Splice_Site_SNP SNP G C uc002uhz.2 Hybrid_Cap... view