Annotation Summary for Cell Line: J82  

Cell line primary name: J82
Cell line aliases:
Gender: M
Site Primary: urinary_tract
Histology: carcinoma
Hist Subtype1: transitional_cell_carcinoma
Notes:
Source: ATCC
Expression arrays: BRAKE_p_NCLE_RNA2_HG-U133_Plus_2_D12_241136
SNP arrays: ARLES_p_NCLE_DNAAffy2_S_GenomeWideSNP_6_G06_256156
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in J82

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 J82_URINARY_TRA... 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ACACA 17 35766564 35766564 J82_URINARY_TRA... 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ACVRL1 12 52306156 52306156 J82_URINARY_TRA... 37 Intron SNP A G uc001rzj.2 ACVRL1_uc001rzk... Hybrid_Cap... view
ADAM17 2 9630245 9630245 J82_URINARY_TRA... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAMTS20 p.G178fs 12 43925919 43925919 J82_URINARY_TRA... 37 Frame_Shift_Del Del C - uc010skx.1 Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 J82_URINARY_TRA... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.Q1352E 7 91652229 91652229 J82_URINARY_TRA... 37 Missense_Mutation SNP C G rs61757669 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap... view
APC p.S770P 5 112173599 112173599 J82_URINARY_TRA... 37 Missense_Mutation SNP T C uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
AURKC 19 57742494 57742507 J82_URINARY_TRA... 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BAI3 p.I108L 6 69348889 69348889 J82_URINARY_TRA... 37 Missense_Mutation SNP A T uc003pev.3 BAI3_uc010kak.2... Hybrid_Cap... view
BCR p.S400P 22 23524345 23524345 J82_URINARY_TRA... 37 Missense_Mutation SNP T C uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap... view
C17ORF37 17 37885640 37885641 J82_URINARY_TRA... 37 3'UTR Ins - G rs75811535 uc002hsq.2 Hybrid_Cap...
CABC1 1 227171585 227171585 J82_URINARY_TRA... 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CABC1 1 227171736 227171737 J82_URINARY_TRA... 37 Intron Ins - T rs1574184 uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CACNB2 10 18828721 18828722 J82_URINARY_TRA... 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CCR5 p.V131F 3 46414784 46414784 J82_URINARY_TRA... 37 Missense_Mutation SNP G T rs34418657 uc003cpo.3 CCR5_uc010hjd.2... Hybrid_Cap... view
CDK10 16 89759883 89759885 J82_URINARY_TRA... 37 Intron Del CTT - uc010cio.2 CDK10_uc010cip.... Hybrid_Cap...
CDK14 p.S123S 7 90356126 90356126 J82_URINARY_TRA... 37 Silent SNP G A rs55722725 uc003uky.2 CDK14_uc003ukt.... Hybrid_Cap... view
CHD1 p.P1684del 5 98192165 98192167 J82_URINARY_TRA... 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHD9 p.2164_2165SS>S 16 53338410 53338412 J82_URINARY_TRA... 37 In_Frame_Del Del TTC - uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 J82_URINARY_TRA... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
COL18A1 p.R172H 21 46875959 46875959 J82_URINARY_TRA... 37 Missense_Mutation SNP G A uc011afs.1 COL18A1_uc002zh... Hybrid_Cap... view
CSMD3 p.W2745C 8 113316981 113316981 J82_URINARY_TRA... 37 Missense_Mutation SNP C G uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
DACH1 13 72014625 72014626 J82_URINARY_TRA... 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DST 6 56483361 56483361 J82_URINARY_TRA... 37 Intron SNP T C uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
EDN1 6 12290729 12290729 J82_URINARY_TRA... 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF4B p.Q388R 12 53427773 53427773 J82_URINARY_TRA... 37 Missense_Mutation SNP A G uc010snu.1 EIF4B_uc001sbh.... Hybrid_Cap... view
EIF4E 4 99808137 99808141 J82_URINARY_TRA... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EPHA6 3 97367230 97367231 J82_URINARY_TRA... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ERBB4 p.R1045G 2 212285168 212285168 J82_URINARY_TRA... 37 Missense_Mutation SNP T C uc002veg.1 ERBB4_uc002veh.... Hybrid_Cap... view
ETV1 7 14028708 14028708 J82_URINARY_TRA... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 J82_URINARY_TRA... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 p.K652E 4 1807889 1807889 J82_URINARY_TRA... 37 Missense_Mutation SNP A G rs78311289 uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap... view
FGFR3 4 1809128 1809129 J82_URINARY_TRA... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 J82_URINARY_TRA... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLT1 p.L1061V 13 28893665 28893665 J82_URINARY_TRA... 37 Missense_Mutation SNP G C uc001usb.3 FLT1_uc010aap.2... Hybrid_Cap... view
FLT4 5 180035183 180035185 J82_URINARY_TRA... 37 Intron Del AGT - uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap...
FN1 2 216244182 216244185 J82_URINARY_TRA... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FZD1 p.I323T 7 90895163 90895163 J82_URINARY_TRA... 37 Missense_Mutation SNP T C uc003ula.2 Hybrid_Cap... view
GLI1 p.L252M 12 57859700 57859700 J82_URINARY_TRA... 37 Missense_Mutation SNP C A uc001snx.2 GLI1_uc009zpq.2... Hybrid_Cap... view
GLI1 p.S545G 12 57864156 57864156 J82_URINARY_TRA... 37 Missense_Mutation SNP A G uc001snx.2 GLI1_uc009zpq.2... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 J82_URINARY_TRA... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 J82_URINARY_TRA... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 J82_URINARY_TRA... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HNF1A 12 121434630 121434631 J82_URINARY_TRA... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSPB1 7 75933562 75933562 J82_URINARY_TRA... 37 3'UTR SNP G C uc003uew.2 HSPB1_uc010ldj.... Hybrid_Cap... view
IKBKB p.T8R 8 42129641 42129641 J82_URINARY_TRA... 37 Missense_Mutation SNP C G uc003xow.1 IKBKB_uc003xov.... Hybrid_Cap... view
ILK 11 6630029 6630029 J82_URINARY_TRA... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 J82_URINARY_TRA... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDM6A p.C1413Y X 44969400 44969400 J82_URINARY_TRA... 37 Missense_Mutation SNP G A uc011mkz.1 KDM6A_uc004dge.... Hybrid_Cap... view
LRRK2 p.E1190* 12 40696662 40696662 J82_URINARY_TRA... 37 Nonsense_Mutation SNP G T uc001rmg.3 LRRK2_uc001rmh.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 J82_URINARY_TRA... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 J82_URINARY_TRA... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 J82_URINARY_TRA... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPK14 6 36076345 36076354 J82_URINARY_TRA... 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 J82_URINARY_TRA... 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MAPKBP1 15 42111753 42111754 J82_URINARY_TRA... 37 Intron Ins - C rs3034891 uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MED13L p.S888N 12 116434942 116434942 J82_URINARY_TRA... 37 Missense_Mutation SNP C T rs61756229 uc001tvw.2 Hybrid_Cap... view
MLL3 p.G1517R 7 151891205 151891205 J82_URINARY_TRA... 37 Missense_Mutation SNP C T uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MTOR p.S1178F 1 11272397 11272397 J82_URINARY_TRA... 37 Missense_Mutation SNP G A rs55975118 uc001asd.2 Hybrid_Cap... view
NCAM1 11 112832276 112832277 J82_URINARY_TRA... 37 5'UTR Ins - G uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832307 112832308 J82_URINARY_TRA... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 J82_URINARY_TRA... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 J82_URINARY_TRA... 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NCOA3 20 46282339 46282340 J82_URINARY_TRA... 37 3'UTR Ins - AT uc002xtk.2 NCOA3_uc002xtl.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 J82_URINARY_TRA... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK3 p.P81R 13 52728247 52728247 J82_URINARY_TRA... 37 Missense_Mutation SNP G C rs55946204 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap... view
NFIA 1 61921185 61921186 J82_URINARY_TRA... 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOS3 p.R670Q 7 150704261 150704261 J82_URINARY_TRA... 37 Missense_Mutation SNP G A uc003wif.2 NOS3_uc011kuy.1... Hybrid_Cap... view
NPM1 5 170837734 170837734 J82_URINARY_TRA... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 J82_URINARY_TRA... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP98 11 3733713 3733713 J82_URINARY_TRA... 37 Intron SNP C A uc001lyh.2 NUP98_uc001lyi.... Hybrid_Cap... view
PAX3 2 223158653 223158653 J82_URINARY_TRA... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAXIP1 p.F780V 7 154752699 154752699 J82_URINARY_TRA... 37 Missense_Mutation SNP A C rs61752006 uc003wlp.2 PAXIP1_uc003wlq... Hybrid_Cap... view
PDGFRA 4 55131002 55131002 J82_URINARY_TRA... 37 Intron Del A - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PI4K2B p.A192V 4 25256838 25256838 J82_URINARY_TRA... 37 Missense_Mutation SNP C T uc003grk.2 PI4K2B_uc011bxs... Hybrid_Cap... view
PIK3C2G p.P129del 12 18435399 18435401 J82_URINARY_TRA... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3C2G 12 18800990 18800990 J82_URINARY_TRA... 37 3'UTR Del A - rs16914368 uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CA p.P124L 3 178917496 178917496 J82_URINARY_TRA... 37 Missense_Mutation SNP C T uc003fjk.2 Hybrid_Cap... view
PIP5KL1 p.R263C 9 130687516 130687516 J82_URINARY_TRA... 37 Missense_Mutation SNP G A uc011mao.1 PIP5KL1_uc004bs... Hybrid_Cap... view
PRKD3 2 37480319 37480320 J82_URINARY_TRA... 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 J82_URINARY_TRA... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTK7 p.H615Q 6 43109721 43109721 J82_URINARY_TRA... 37 Missense_Mutation SNP C A uc011dve.1 PTK7_uc003oub.1... Hybrid_Cap... view
RAP1GDS1 4 99363349 99363353 J82_URINARY_TRA... 37 3'UTR Del TACCA - uc003htw.3 RAP1GDS1_uc003h... Hybrid_Cap...
RAPGEF2 4 160189200 160189201 J82_URINARY_TRA... 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RB1 p.I703_splice 13 49037865 49037865 J82_URINARY_TRA... 37 Splice_Site_SNP SNP A G uc001vcb.2 Hybrid_Cap... view
RBPJ 4 26431822 26431822 J82_URINARY_TRA... 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 J82_URINARY_TRA... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RET p.F1112Y 10 43623707 43623707 J82_URINARY_TRA... 37 Missense_Mutation SNP T A uc001jal.2 Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 J82_URINARY_TRA... 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
SPEN p.S2530G 1 16260323 16260323 J82_URINARY_TRA... 37 Missense_Mutation SNP A G rs61756186 uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap... view
TEC 4 48139307 48139310 J82_URINARY_TRA... 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TP53 p.K320N 17 7576886 7576886 J82_URINARY_TRA... 37 Missense_Mutation SNP C G uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP53 p.E271K 17 7577127 7577127 J82_URINARY_TRA... 37 Missense_Mutation SNP C T rs67389650 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 J82_URINARY_TRA... 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TPR p.K877E 1 186319502 186319502 J82_URINARY_TRA... 37 Missense_Mutation SNP T C uc001grv.2 Hybrid_Cap... view
TRPS1 8 116635872 116635873 J82_URINARY_TRA... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN p.V22964A 2 179434264 179434264 J82_URINARY_TRA... 37 Missense_Mutation SNP A G rs55984930 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.K2767T 2 179635219 179635219 J82_URINARY_TRA... 37 Missense_Mutation SNP T G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 J82_URINARY_TRA... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
YSK4 p.E1160V 2 135738832 135738832 J82_URINARY_TRA... 37 Missense_Mutation SNP T A uc002tue.1 YSK4_uc002tuf.1... Hybrid_Cap... view