Annotation Summary for Cell Line: JHH-6  

Cell line primary name: JHH-6
Cell line aliases:
Gender: F
Site Primary: liver
Histology: carcinoma
Hist Subtype1: hepatocellular_carcinoma
Notes:
Source: HSRRB
Expression arrays: CRAZY_p_NCLE_RNA10_HG-U133_Plus_2_E01_569420
SNP arrays: VAULT_p_NCLE_DNAAffy14_GenomeWideSNP_6_G05_698646
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in JHH-6

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 JHH6_LIVER 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AFF4 p.R831Q 5 132228001 132228001 JHH6_LIVER 37 Missense_Mutation SNP C T uc003kyd.2 AFF4_uc011cxk.1... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 JHH6_LIVER 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 JHH6_LIVER 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
AXIN1 p.5_6EQ>D* 16 397010 397011 JHH6_LIVER 37 Nonsense_Mutation DNP GC AA uc002cgp.1 AXIN1_uc002cgq.... Hybrid_Cap...
BCL2L1 p.P55S 20 30309859 30309859 JHH6_LIVER 37 Missense_Mutation SNP G A uc002wwl.2 BCL2L1_uc002wwk... Hybrid_Cap... view
C15ORF2 p.A776S 15 24923340 24923340 JHH6_LIVER 37 Missense_Mutation SNP G T uc001ywo.2 Hybrid_Cap... view
CACNB2 10 18828721 18828722 JHH6_LIVER 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CASP1 11 104896805 104896805 JHH6_LIVER 37 Intron SNP C T uc010rve.1 CASP5_uc010ruz.... Hybrid_Cap... view
CASP9 1 15819666 15819666 JHH6_LIVER 37 Intron SNP G A uc001awn.2 CASP9_uc001awm.... Hybrid_Cap... view
CDK11B 1 1654066 1654068 JHH6_LIVER 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 JHH6_LIVER 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHD8 14 21853630 21853630 JHH6_LIVER 37 3'UTR Del T - rs78520772 uc001was.1 CHD8_uc001war.1... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 JHH6_LIVER 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN5 11 100227144 100227144 JHH6_LIVER 37 3'UTR SNP C T uc001pga.2 CNTN5_uc001pgb.... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 JHH6_LIVER 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CTTN p.D450N 11 70279767 70279767 JHH6_LIVER 37 Missense_Mutation SNP G A uc001opu.2 CTTN_uc001opv.3... Hybrid_Cap... view
DACH1 13 72014625 72014626 JHH6_LIVER 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
EDN1 6 12290729 12290729 JHH6_LIVER 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EEF1D 8 144661957 144661957 JHH6_LIVER 37 3'UTR SNP A G uc003yyq.1 NAPRT1_uc003yym... Hybrid_Cap... view
EGF p.E1134fs 4 110932389 110932390 JHH6_LIVER 37 Frame_Shift_Ins Ins - C rs11569144 uc003hzy.3 EGF_uc011cfu.1_... Hybrid_Cap...
EPHA6 3 97367230 97367231 JHH6_LIVER 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB6 p.A221A 7 142562221 142562221 JHH6_LIVER 37 Silent SNP C T uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap... view
FANCF p.S372T 11 22646242 22646242 JHH6_LIVER 37 Missense_Mutation SNP C G uc001mql.1 Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 JHH6_LIVER 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 JHH6_LIVER 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 JHH6_LIVER 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FOXP1 3 71008341 71008342 JHH6_LIVER 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 JHH6_LIVER 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 JHH6_LIVER 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HIF1A 14 62213929 62213930 JHH6_LIVER 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HMMR p.L481V 5 162909703 162909703 JHH6_LIVER 37 Missense_Mutation SNP T G uc003lzh.2 HMMR_uc003lzf.2... Hybrid_Cap... view
HNF1A 12 121434630 121434631 JHH6_LIVER 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 JHH6_LIVER 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB4 p.N1229D 17 73747084 73747084 JHH6_LIVER 37 Missense_Mutation SNP A G uc002jpg.2 ITGB4_uc002jph.... Hybrid_Cap... view
ITPR2 p.T969I 12 26784827 26784827 JHH6_LIVER 37 Missense_Mutation SNP G A uc001rhg.2 Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 JHH6_LIVER 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480529 51480529 JHH6_LIVER 37 3'UTR SNP G A uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap... view
KLK7 19 51480672 51480675 JHH6_LIVER 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LIFR p.R860Q 5 38484889 38484889 JHH6_LIVER 37 Missense_Mutation SNP C T uc010ive.1 LIFR_uc003jli.2... Hybrid_Cap... view
LMTK2 p.D1292N 7 97823651 97823651 JHH6_LIVER 37 Missense_Mutation SNP G A uc003upd.1 Hybrid_Cap... view
LRP1B p.R4573Q 2 140990837 140990837 JHH6_LIVER 37 Missense_Mutation SNP C T uc002tvj.1 Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 JHH6_LIVER 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 JHH6_LIVER 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 JHH6_LIVER 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K14 p.E413D 17 43362230 43362230 JHH6_LIVER 37 Missense_Mutation SNP C A uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap... view
MAST4 p.R171C 5 66398371 66398371 JHH6_LIVER 37 Missense_Mutation SNP C T uc003jut.1 MAST4_uc003jus.... Hybrid_Cap... view
MAST4 p.S1871del 5 66461181 66461183 JHH6_LIVER 37 In_Frame_Del Del CTC - uc003jut.1 MAST4_uc003juw.... Hybrid_Cap...
MCM3APAS 21 47671275 47671276 JHH6_LIVER 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MECOM 3 168862932 168862939 JHH6_LIVER 37 Intron Del ACACA... - uc011bpj.1 MECOM_uc003ffj.... Hybrid_Cap...
MMP20 p.L407F 11 102464198 102464198 JHH6_LIVER 37 Missense_Mutation SNP G A uc001phc.2 Hybrid_Cap... view
MST4 X 131208297 131208297 JHH6_LIVER 37 3'UTR SNP C A uc011mux.1 MST4_uc004ewk.1... Hybrid_Cap... view
MYLK 3 123332876 123332876 JHH6_LIVER 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 JHH6_LIVER 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 JHH6_LIVER 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.S1337L 20 46281213 46281213 JHH6_LIVER 37 Missense_Mutation SNP C T uc002xtk.2 NCOA3_uc002xtl.... Hybrid_Cap... view
NCOA3 20 46282339 46282340 JHH6_LIVER 37 3'UTR Ins - AT uc002xtk.2 NCOA3_uc002xtl.... Hybrid_Cap...
NF1 p.Q1033R 17 29557385 29557385 JHH6_LIVER 37 Missense_Mutation SNP A G uc002hgg.2 NF1_uc002hgh.2_... Hybrid_Cap... view
NF1 p.F1037C 17 29557397 29557397 JHH6_LIVER 37 Missense_Mutation SNP T G uc002hgg.2 NF1_uc002hgh.2_... Hybrid_Cap... view
NF1 p.R1396H 17 29585375 29585375 JHH6_LIVER 37 Missense_Mutation SNP G A uc002hgg.2 NF1_uc002hgh.2_... Hybrid_Cap... view
NF1 p.R1412T 17 29585423 29585423 JHH6_LIVER 37 Missense_Mutation SNP G C uc002hgg.2 NF1_uc002hgh.2_... Hybrid_Cap... view
NPM1 5 170837734 170837734 JHH6_LIVER 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 JHH6_LIVER 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 JHH6_LIVER 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223066017 223066018 JHH6_LIVER 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 JHH6_LIVER 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP 1 144863620 144863620 JHH6_LIVER 37 Intron SNP A G uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDK4 7 95221928 95221928 JHH6_LIVER 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PGR 11 100933598 100933599 JHH6_LIVER 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2B p.V904A 1 204413520 204413520 JHH6_LIVER 37 Missense_Mutation SNP A G uc001haw.2 PIK3C2B_uc010pq... Hybrid_Cap... view
PIK3C2G p.P129del 12 18435399 18435401 JHH6_LIVER 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3C2G 12 18800990 18800990 JHH6_LIVER 37 3'UTR Del A - rs16914368 uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 JHH6_LIVER 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 JHH6_LIVER 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RIPK4 p.M64T 21 43176968 43176968 JHH6_LIVER 37 Missense_Mutation SNP A G uc002yzn.1 Hybrid_Cap... view
SGK1 p.A419T 6 134492229 134492229 JHH6_LIVER 37 Missense_Mutation SNP C T uc003qeo.3 SGK1_uc011ect.1... Hybrid_Cap... view
STK31 7 23872024 23872025 JHH6_LIVER 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TCF3 p.S601L 19 1615316 1615316 JHH6_LIVER 37 Missense_Mutation SNP G A uc002ltq.2 TCF3_uc002ltn.2... Hybrid_Cap... view
TET2 p.P677R 4 106157066 106157066 JHH6_LIVER 37 Missense_Mutation SNP C G uc011cez.1 TET2_uc003hxk.2... Hybrid_Cap... view
TMEM123 11 102269398 102269398 JHH6_LIVER 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TRPS1 8 116635872 116635873 JHH6_LIVER 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 JHH6_LIVER 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 JHH6_LIVER 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK3 p.SCSPQKT127del 19 50510972 50510992 JHH6_LIVER 37 In_Frame_Del Del CTGGT... - rs117711287;rs117077533 uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap...