Annotation Summary for Cell Line: JIMT-1  

Cell line primary name: JIMT-1
Cell line aliases:
Gender: F
Site Primary: breast
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes:
Source: DSMZ
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_H09_474734
SNP arrays: CHARY_p_NCLE_DNAAffy9_GenomeWideSNP_6_B07_490458
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in JIMT-1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 JIMT1_BREAST 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 JIMT1_BREAST 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 JIMT1_BREAST 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 JIMT1_BREAST 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALS2 p.L723F 2 202608982 202608982 JIMT1_BREAST 37 Missense_Mutation SNP T G uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap... view
ARID1A p.Q586del 1 27058045 27058047 JIMT1_BREAST 37 In_Frame_Del Del CAG - uc001bmv.1 ARID1A_uc001bmt... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 JIMT1_BREAST 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
BCL3 19 45262908 45262908 JIMT1_BREAST 37 3'UTR SNP G A uc010xxe.1 Hybrid_Cap... view
BCR 22 23631813 23631814 JIMT1_BREAST 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CABC1 1 227171585 227171585 JIMT1_BREAST 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 JIMT1_BREAST 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CXCL12 10 44873992 44873993 JIMT1_BREAST 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DIP2C 10 415689 415689 JIMT1_BREAST 37 Intron SNP C G uc001ifp.2 DIP2C_uc009xhi.... Hybrid_Cap... view
DNAH8 p.E1899A 6 38831685 38831685 JIMT1_BREAST 37 Missense_Mutation SNP A C uc003ooe.1 Hybrid_Cap... view
DST 6 56473206 56473206 JIMT1_BREAST 37 Intron SNP A G uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
EPHA3 3 89448689 89448689 JIMT1_BREAST 37 Intron SNP G C uc003dqy.2 EPHA3_uc003dqx.... Hybrid_Cap... view
EPHB3 p.P859S 3 184298796 184298796 JIMT1_BREAST 37 Missense_Mutation SNP C T uc003foz.2 Hybrid_Cap... view
ETV1 7 14028708 14028708 JIMT1_BREAST 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FASN 17 80036961 80036961 JIMT1_BREAST 37 3'UTR SNP G C uc002kdu.2 FASN_uc002kdv.1... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 JIMT1_BREAST 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 JIMT1_BREAST 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
GATS 7 99799294 99799294 JIMT1_BREAST 37 3'UTR SNP A C uc003uua.3 STAG3_uc010lgs.... Hybrid_Cap... view
GRIA3 X 122318386 122318387 JIMT1_BREAST 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIN2A p.D785N 16 9892137 9892137 JIMT1_BREAST 37 Missense_Mutation SNP C T uc002czo.3 GRIN2A_uc010uym... Hybrid_Cap... view
GUCY2C 12 14827464 14827466 JIMT1_BREAST 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HNF1A 12 121434630 121434631 JIMT1_BREAST 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90B1 p.E791del 12 104341188 104341190 JIMT1_BREAST 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 JIMT1_BREAST 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
LAMA1 p.I1547F 18 6999468 6999468 JIMT1_BREAST 37 Missense_Mutation SNP T A uc002knm.2 LAMA1_uc010wzj.... Hybrid_Cap... view
MAF p.V271L 16 79632989 79632989 JIMT1_BREAST 37 Missense_Mutation SNP C A uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 JIMT1_BREAST 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 JIMT1_BREAST 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 JIMT1_BREAST 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP4K5 14 50886558 50886558 JIMT1_BREAST 37 3'UTR SNP G A uc001wya.2 MAP4K5_uc001wyb... Hybrid_Cap... view
MAPKAPK3 3 50685575 50685575 JIMT1_BREAST 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MCF2 X 138724730 138724730 JIMT1_BREAST 37 Intron SNP T A uc011mwo.1 MCF2_uc004fau.2... Hybrid_Cap... view
MELK p.L320H 9 36651780 36651780 JIMT1_BREAST 37 Missense_Mutation SNP T A uc003zzn.2 MELK_uc011lpm.1... Hybrid_Cap... view
NCAM1 11 112832307 112832308 JIMT1_BREAST 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 JIMT1_BREAST 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 JIMT1_BREAST 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61921185 61921186 JIMT1_BREAST 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NFKB1 p.D917_splice 4 103534740 103534741 JIMT1_BREAST 37 Splice_Site_Ins Ins - A rs35795162 uc011cep.1 NFKB1_uc011ceq.... Hybrid_Cap...
NIN p.G2027_splice 14 51192786 51192786 JIMT1_BREAST 37 Splice_Site_SNP SNP T C uc001wyi.2 NIN_uc001wyj.2_... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881820 50881821 JIMT1_BREAST 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
ODZ1 X 124097626 124097626 JIMT1_BREAST 37 5'UTR SNP C A uc010nqy.2 ODZ1_uc011muj.1... Hybrid_Cap... view
ODZ1 X 124097633 124097633 JIMT1_BREAST 37 5'UTR SNP A T uc010nqy.2 ODZ1_uc011muj.1... Hybrid_Cap... view
PDE4DIP p.L2318_splice 1 144854212 144854212 JIMT1_BREAST 37 Splice_Site_SNP SNP C T uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDE4DIP p.Q1665fs 1 144873963 144873963 JIMT1_BREAST 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGGT1B 5 114548071 114548072 JIMT1_BREAST 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 JIMT1_BREAST 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CA p.C420R 3 178927980 178927980 JIMT1_BREAST 37 Missense_Mutation SNP T C uc003fjk.2 Hybrid_Cap... view
PINK1 p.V350M 1 20972141 20972141 JIMT1_BREAST 37 Missense_Mutation SNP G A uc001bdm.2 PINK1_uc001bdn.... Hybrid_Cap... view
PKHD1 p.S1833L 6 51882310 51882310 JIMT1_BREAST 37 Missense_Mutation SNP G A uc003pah.1 PKHD1_uc003pai.... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 JIMT1_BREAST 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPRT p.G903R 20 40790024 40790024 JIMT1_BREAST 37 Missense_Mutation SNP C G uc010ggj.2 PTPRT_uc002xkg.... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 JIMT1_BREAST 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
SIK3 p.N586N 11 116734411 116734411 JIMT1_BREAST 37 Silent SNP G A uc001ppy.2 SIK3_uc001ppz.2... Hybrid_Cap... view
SPEG p.G1383S 2 220337818 220337818 JIMT1_BREAST 37 Missense_Mutation SNP G A uc010fwg.2 Hybrid_Cap... view
STK31 7 23872024 23872025 JIMT1_BREAST 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TP53 p.R248W 17 7577539 7577539 JIMT1_BREAST 37 Missense_Mutation SNP G A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 JIMT1_BREAST 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIO p.Y2117C 5 14481356 14481356 JIMT1_BREAST 37 Missense_Mutation SNP A G uc003jff.2 TRIO_uc003jfg.2... Hybrid_Cap... view
TRPM7 p.M1043V 15 50891355 50891355 JIMT1_BREAST 37 Missense_Mutation SNP T C uc001zyt.3 TRPM7_uc010bew.... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 JIMT1_BREAST 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...