Annotation Summary for Cell Line: JJN-3  

Cell line primary name: JJN-3
Cell line aliases:
Gender: F
Site Primary: haematopoietic_and_lymphoid_tissue
Histology: lymphoid_neoplasm
Hist Subtype1: plasma_cell_myeloma
Notes:
Source: DSMZ
Expression arrays: SILOS_p_NCLE_RNA9_HG-U133_Plus_2_C08_523538
SNP arrays:
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in JJN-3

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 JJN3_HAEMATOPOI... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 JJN3_HAEMATOPOI... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 JJN3_HAEMATOPOI... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK2 p.1388_1389FF>F 18 56203253 56203255 JJN3_HAEMATOPOI... 37 In_Frame_Del Del AAG - uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ARID1A 1 27107263 27107264 JJN3_HAEMATOPOI... 37 3'UTR Ins - C rs3841356 uc001bmv.1 ARID1A_uc001bmu... Hybrid_Cap...
BCL3 19 45262965 45262965 JJN3_HAEMATOPOI... 37 3'UTR Del C - uc010xxe.1 Hybrid_Cap...
BCR 22 23632777 23632778 JJN3_HAEMATOPOI... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
C17ORF37 17 37885640 37885641 JJN3_HAEMATOPOI... 37 3'UTR Ins - G rs75811535 uc002hsq.2 Hybrid_Cap...
CAMK2A 5 149602223 149602224 JJN3_HAEMATOPOI... 37 3'UTR Del AC - uc003lrt.2 CAMK2A_uc003lrs... Hybrid_Cap...
CDK10 16 89762172 89762172 JJN3_HAEMATOPOI... 37 3'UTR SNP G A uc010cio.2 CDK10_uc002fod.... Hybrid_Cap... view
CHRNB4 p.I268L 15 78921845 78921845 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP T G uc002bed.1 CHRNB4_uc002bee... Hybrid_Cap... view
CLK1 p.N141S 2 201726055 201726055 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP T C uc010zhi.1 CLK1_uc002uwe.2... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 JJN3_HAEMATOPOI... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 JJN3_HAEMATOPOI... 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSMD3 p.S3470C 8 113254008 113254008 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G C uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CUBN p.V2865M 10 16941000 16941000 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc001ioo.2 CUBN_uc009xjq.1... Hybrid_Cap... view
DAB1 p.Q352H 1 57480944 57480944 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C A uc001cys.1 DAB1_uc001cyt.1... Hybrid_Cap... view
DCLK3 3 36780308 36780308 JJN3_HAEMATOPOI... 37 5'UTR SNP C T uc003cgi.2 Hybrid_Cap... view
DFNA5 p.F263V 7 24749918 24749918 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP A C uc010kus.1 DFNA5_uc003swz.... Hybrid_Cap... view
DLC1 p.H109Q 8 13357254 13357254 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP A C uc003wwm.2 DLC1_uc003wwn.2... Hybrid_Cap... view
DST p.I2306V 6 56437826 56437826 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP T C uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
DYRK1A 21 38884966 38884967 JJN3_HAEMATOPOI... 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EDN1 6 12290729 12290729 JJN3_HAEMATOPOI... 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF4E 4 99808137 99808141 JJN3_HAEMATOPOI... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EPHA6 3 97367230 97367231 JJN3_HAEMATOPOI... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHA8 p.R1003W 1 22928223 22928223 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc001bfx.1 Hybrid_Cap... view
EXT1 8 118811807 118811807 JJN3_HAEMATOPOI... 37 3'UTR Del T - uc003yok.1 Hybrid_Cap...
FANCA p.R914K 16 89831335 89831335 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc002fou.1 FANCA_uc010vpn.... Hybrid_Cap... view
FANCD2 3 10143086 10143087 JJN3_HAEMATOPOI... 37 3'UTR Ins - A uc003bux.1 FANCD2_uc003buy... Hybrid_Cap...
FANCL 2 58468462 58468462 JJN3_HAEMATOPOI... 37 5'UTR SNP G C uc002rzx.3 FANCL_uc002rzw.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 JJN3_HAEMATOPOI... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 JJN3_HAEMATOPOI... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FN1 2 216244182 216244185 JJN3_HAEMATOPOI... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GRIA3 X 122318386 122318387 JJN3_HAEMATOPOI... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HGF p.I485K 7 81339550 81339550 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP A T uc003uhl.2 HGF_uc003uhm.2_... Hybrid_Cap... view
HGF p.R197H 7 81381471 81381471 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc003uhl.2 HGF_uc003uhm.2_... Hybrid_Cap... view
IGF1R 15 99192755 99192763 JJN3_HAEMATOPOI... 37 5'UTR Del TTTTT... - uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap...
IL6ST p.C54S 5 55265588 55265588 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP A T uc003jqq.2 IL6ST_uc010iwb.... Hybrid_Cap... view
ILK 11 6630029 6630029 JJN3_HAEMATOPOI... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ILK p.G156S 11 6630132 6630132 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G A uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap... view
IRF4 p.C386Y 6 405075 405075 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G A uc003msz.3 IRF4_uc003mta.3... Hybrid_Cap... view
ISG15 1 948846 948847 JJN3_HAEMATOPOI... 37 5'UTR Ins - A rs33916361 uc001acj.3 Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 JJN3_HAEMATOPOI... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 JJN3_HAEMATOPOI... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LASP1 p.K17K 17 37026493 37026493 JJN3_HAEMATOPOI... 37 Silent SNP G A uc002hra.2 LASP1_uc010wdy.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 JJN3_HAEMATOPOI... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 JJN3_HAEMATOPOI... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K11 p.R787W 11 65365947 65365947 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G A uc001oew.2 KCNK7_uc001oeq.... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 JJN3_HAEMATOPOI... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 p.A1199del 6 161519351 161519353 JJN3_HAEMATOPOI... 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MAPKBP1 15 42111753 42111754 JJN3_HAEMATOPOI... 37 Intron Ins - C rs3034891 uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MAST1 p.G1062V 19 12981908 12981908 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G T uc002mvm.2 Hybrid_Cap... view
MET 7 116381154 116381154 JJN3_HAEMATOPOI... 37 Intron SNP T G uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MLLT3 9 20346377 20346378 JJN3_HAEMATOPOI... 37 3'UTR Ins - A rs66943046 uc003zoe.2 MLLT3_uc011lne.... Hybrid_Cap...
NACA p.S617L 12 57113464 57113464 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G A uc009zoy.1 NACA_uc001slz.2... Hybrid_Cap... view
NAV3 p.K1203R 12 78513584 78513584 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP A G uc001syp.2 NAV3_uc001syo.2... Hybrid_Cap... view
NCAM1 11 112832307 112832308 JJN3_HAEMATOPOI... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 JJN3_HAEMATOPOI... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA2 p.Y1384L 8 71036260 71036261 JJN3_HAEMATOPOI... 37 Missense_Mutation DNP GT TA uc003xyn.1 NCOA2_uc011lfb.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 JJN3_HAEMATOPOI... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61921185 61921186 JJN3_HAEMATOPOI... 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NIPBL p.S1672F 5 37020565 37020565 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc003jkl.3 NIPBL_uc003jkk.... Hybrid_Cap... view
NPR1 1 153665919 153665920 JJN3_HAEMATOPOI... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 JJN3_HAEMATOPOI... 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 p.G469R 2 223066678 223066678 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap... view
PAX3 2 223158653 223158653 JJN3_HAEMATOPOI... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PCDH15 p.E1600A 10 55582708 55582708 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP T G uc010qhy.1 PCDH15_uc010qhq... Hybrid_Cap... view
PDE4DIP p.R363R 1 144921940 144921940 JJN3_HAEMATOPOI... 37 Silent SNP T C uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDGFA 7 538023 538023 JJN3_HAEMATOPOI... 37 3'UTR SNP T C uc003sir.2 PDGFA_uc003sis.... Hybrid_Cap... view
PIK3C2G p.P129del 12 18435399 18435401 JJN3_HAEMATOPOI... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PKHD1 p.A1767T 6 51887680 51887680 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP C T uc003pah.1 PKHD1_uc003pai.... Hybrid_Cap... view
PPM1E p.43_44insEP 17 56833457 56833458 JJN3_HAEMATOPOI... 37 In_Frame_Ins Ins - GAACCC rs74256772 uc002iwx.2 PPM1E_uc010ddd.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 JJN3_HAEMATOPOI... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
SLC6A8 X 152957720 152957720 JJN3_HAEMATOPOI... 37 Intron SNP C A uc004fib.3 SLC6A8_uc004fic... Hybrid_Cap... view
SMURF2 p.L67L 17 62589691 62589691 JJN3_HAEMATOPOI... 37 Silent SNP C T uc002jep.1 SMURF2_uc002jeq... Hybrid_Cap... view
STIL p.K309T 1 47755204 47755204 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP T G uc001crd.1 TAL1_uc001crb.1... Hybrid_Cap... view
STK31 7 23872024 23872025 JJN3_HAEMATOPOI... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TCF21 6 134210497 134210498 JJN3_HAEMATOPOI... 37 5'UTR Ins - TCTC rs35199378 uc003qei.3 TCF21_uc003qej.... Hybrid_Cap...
TIE1 1 43779724 43779725 JJN3_HAEMATOPOI... 37 Intron Ins - TG uc001ciu.2 TIE1_uc010oke.1... Hybrid_Cap...
TMEM123 11 102269398 102269398 JJN3_HAEMATOPOI... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 JJN3_HAEMATOPOI... 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP63 3 189507518 189507519 JJN3_HAEMATOPOI... 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIM42 p.V676M 3 140409975 140409975 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G A uc003eto.1 Hybrid_Cap... view
TTBK1 p.E771del 6 43250726 43250728 JJN3_HAEMATOPOI... 37 In_Frame_Del Del GAA - uc003ouq.1 Hybrid_Cap...
TTN p.Q27290K 2 179418055 179418055 JJN3_HAEMATOPOI... 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 JJN3_HAEMATOPOI... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...