Annotation Summary for Cell Line: JM1  

Cell line primary name: JM1
Cell line aliases:
Gender:
Site Primary: haematopoietic_and_lymphoid_tissue
Histology: lymphoid_neoplasm
Hist Subtype1: B_cell_lymphoma_unspecified
Notes:
Source: ATCC
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_H02_383622
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_G06_410956
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in JM1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 JM1_HAEMATOPOIE... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAM29 p.K365E 4 175897769 175897769 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP A G uc003iuc.2 ADAM29_uc003iud... Hybrid_Cap... view
AKAP12 p.E101del 6 151627014 151627016 JM1_HAEMATOPOIE... 37 In_Frame_Del Del GAA - uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 JM1_HAEMATOPOIE... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 JM1_HAEMATOPOIE... 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 JM1_HAEMATOPOIE... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
BCL2 18 60985256 60985256 JM1_HAEMATOPOIE... 37 Intron SNP A T uc002lit.1 BCL2_uc002liu.1... Hybrid_Cap... view
BCL2 p.L95V 18 60985617 60985617 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G C uc002lit.1 BCL2_uc002liu.1... Hybrid_Cap... view
BCR 22 23631813 23631814 JM1_HAEMATOPOIE... 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 JM1_HAEMATOPOIE... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BRD2 p.W136* 6 32943235 32943235 JM1_HAEMATOPOIE... 37 Nonsense_Mutation SNP G A uc010juh.2 BRD2_uc003ocn.3... Hybrid_Cap... view
CHD1 p.P1684del 5 98192165 98192167 JM1_HAEMATOPOIE... 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHL1 3 361418 361418 JM1_HAEMATOPOIE... 37 5'UTR SNP A G uc003bot.2 CHL1_uc003bou.2... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 JM1_HAEMATOPOIE... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
DAPK1 9 90113931 90113931 JM1_HAEMATOPOIE... 37 5'UTR SNP G A uc004apc.2 DAPK1_uc004ape.... Hybrid_Cap... view
DICER1 p.R1839Q 14 95557551 95557551 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc001ydw.2 DICER1_uc010avh... Hybrid_Cap... view
DST 6 56482866 56482866 JM1_HAEMATOPOIE... 37 Intron SNP G T uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
DTX1 12 113495833 113495833 JM1_HAEMATOPOIE... 37 5'UTR SNP C G uc001tuk.1 Hybrid_Cap... view
EIF4A1 17 7481846 7481847 JM1_HAEMATOPOIE... 37 3'UTR Del TG - uc002gho.1 EIF4A1_uc002ghr... Hybrid_Cap...
EIF4E 4 99808137 99808141 JM1_HAEMATOPOIE... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EP300 22 41574970 41574972 JM1_HAEMATOPOIE... 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA6 3 97367230 97367231 JM1_HAEMATOPOIE... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 JM1_HAEMATOPOIE... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FAM123B p.G1031D X 63410075 63410075 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc004dvo.2 Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 JM1_HAEMATOPOIE... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 JM1_HAEMATOPOIE... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 JM1_HAEMATOPOIE... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 JM1_HAEMATOPOIE... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FUS p.S95S 16 31195273 31195273 JM1_HAEMATOPOIE... 37 Silent SNP C T uc002ebi.2 FUS_uc002ebe.1_... Hybrid_Cap... view
GCNT2 p.Y118D 6 10529496 10529496 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP T G uc010joo.2 GCNT2_uc010jol.... Hybrid_Cap... view
GPR112 p.S1873N X 135431483 135431483 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 JM1_HAEMATOPOIE... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 JM1_HAEMATOPOIE... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 JM1_HAEMATOPOIE... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 JM1_HAEMATOPOIE... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
ILK 11 6630029 6630029 JM1_HAEMATOPOIE... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB8 7 20371623 20371623 JM1_HAEMATOPOIE... 37 Intron SNP G T uc003suu.2 ITGB8_uc011jyh.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 JM1_HAEMATOPOIE... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KIAA1409 p.V2077I 14 94129001 94129001 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc001ybv.1 KIAA1409_uc001y... Hybrid_Cap... view
KLK7 19 51480672 51480675 JM1_HAEMATOPOIE... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KSR2 p.R809C 12 117914339 117914339 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc001two.2 Hybrid_Cap... view
LCP1 13 46701580 46701580 JM1_HAEMATOPOIE... 37 3'UTR SNP G T uc001vaz.3 LCP1_uc010ack.2... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 JM1_HAEMATOPOIE... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 JM1_HAEMATOPOIE... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 JM1_HAEMATOPOIE... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPK12 22 50695245 50695245 JM1_HAEMATOPOIE... 37 Intron SNP G A uc003bkm.1 MAPK12_uc003bkn... Hybrid_Cap... view
MAPKAPK3 3 50685575 50685575 JM1_HAEMATOPOIE... 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MAPKBP1 15 42111744 42111745 JM1_HAEMATOPOIE... 37 Intron Ins - C rs116367502 uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MATK p.V418I 19 3778542 3778542 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc002lyv.2 MATK_uc002lyt.2... Hybrid_Cap... view
MCM3AP p.D373H 21 47704084 47704084 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C G uc002zir.1 C21orf57_uc002z... Hybrid_Cap... view
MLLT6 17 36881873 36881873 JM1_HAEMATOPOIE... 37 3'UTR Del C - uc002hqi.3 MLLT6_uc002hqk.... Hybrid_Cap...
MUTYH 1 45805789 45805789 JM1_HAEMATOPOIE... 37 Intron SNP G C uc009vxp.2 MUTYH_uc001cnf.... Hybrid_Cap... view
MYC p.T73N 8 128750681 128750681 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C A uc003ysi.2 MYC_uc003ysh.1_... Hybrid_Cap... view
MYST4 p.E1104del 10 76781906 76781908 JM1_HAEMATOPOIE... 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NACA p.P1226L 12 57111637 57111637 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc009zoy.1 NACA_uc001slz.2... Hybrid_Cap... view
NCAM1 11 112832307 112832308 JM1_HAEMATOPOIE... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 JM1_HAEMATOPOIE... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 JM1_HAEMATOPOIE... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61921185 61921186 JM1_HAEMATOPOIE... 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NPR1 1 153665919 153665920 JM1_HAEMATOPOIE... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 JM1_HAEMATOPOIE... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUAK1 p.V512L 12 106461032 106461032 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C A uc001tlj.1 Hybrid_Cap... view
PAX3 2 223158653 223158653 JM1_HAEMATOPOIE... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PGGT1B 5 114548071 114548072 JM1_HAEMATOPOIE... 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 JM1_HAEMATOPOIE... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3R4 p.E893K 3 130425836 130425836 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc003enj.2 Hybrid_Cap... view
PPP1R3A p.T493M 7 113519669 113519669 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc010ljy.1 Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 JM1_HAEMATOPOIE... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRRX1 p.A201T 1 170705190 170705190 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc001ghf.2 PRRX1_uc001ghe.... Hybrid_Cap... view
PTK7 p.R196W 6 43098059 43098059 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc011dve.1 PTK7_uc003oub.1... Hybrid_Cap... view
RAPGEF2 4 160189200 160189201 JM1_HAEMATOPOIE... 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 JM1_HAEMATOPOIE... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
STK31 7 23872024 23872025 JM1_HAEMATOPOIE... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TCF3 p.P473L 19 1615700 1615700 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G A uc002ltq.2 TCF3_uc002ltn.2... Hybrid_Cap... view
TEC 4 48139307 48139310 JM1_HAEMATOPOIE... 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TP63 3 189507518 189507519 JM1_HAEMATOPOIE... 37 Intron Ins - AG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 JM1_HAEMATOPOIE... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTBK1 p.I94V 6 43221052 43221052 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP A G uc003ouq.1 Hybrid_Cap... view
TTBK1 p.E771del 6 43250726 43250728 JM1_HAEMATOPOIE... 37 In_Frame_Del Del GAA - uc003ouq.1 Hybrid_Cap...
TTN 2 179391639 179391640 JM1_HAEMATOPOIE... 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 JM1_HAEMATOPOIE... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WLS p.L347V 1 68614271 68614271 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP G C uc001dee.2 WLS_uc001def.1_... Hybrid_Cap... view
XPO4 p.S498_splice 13 21382722 21382722 JM1_HAEMATOPOIE... 37 Splice_Site_SNP SNP T A uc001unq.3 Hybrid_Cap... view
ZMYND10 p.A399T 3 50379057 50379057 JM1_HAEMATOPOIE... 37 Missense_Mutation SNP C T uc003dag.1 RASSF1_uc003dad... Hybrid_Cap... view