Annotation Summary for Cell Line: LCLC-97TM1  

Cell line primary name: LCLC-97TM1
Cell line aliases:
Gender: M
Site Primary: lung
Histology: carcinoma
Hist Subtype1: large_cell_carcinoma
Notes:
Source: DSMZ
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_E10_474630
SNP arrays: MISTS_p_NCLE_DNAAffy11_GenomeWideSNP_6_B01_578428
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in LCLC-97TM1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 LCLC97TM1_LUNG 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABCC3 p.N1485D 17 48765069 48765069 LCLC97TM1_LUNG 37 Missense_Mutation SNP A G uc002isl.2 ABCC3_uc002isn.... Hybrid_Cap... view
ACVR1C 2 158390322 158390322 LCLC97TM1_LUNG 37 3'UTR SNP T A uc002tzk.3 ACVR1C_uc002tzl... Hybrid_Cap... view
ADAM17 2 9630245 9630245 LCLC97TM1_LUNG 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM17 2 9667888 9667888 LCLC97TM1_LUNG 37 Intron SNP A T uc002qzu.2 ADAM17_uc010ewy... Hybrid_Cap... view
ADAM28 8 24211994 24211997 LCLC97TM1_LUNG 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 p.R317W 14 78390890 78390890 LCLC97TM1_LUNG 37 Missense_Mutation SNP C T uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap... view
AFF3 2 100343526 100343526 LCLC97TM1_LUNG 37 Intron SNP G C uc002taf.2 AFF3_uc002tag.2... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 LCLC97TM1_LUNG 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 4 113347609 113347610 LCLC97TM1_LUNG 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ARHGAP29 1 94668024 94668024 LCLC97TM1_LUNG 37 Intron SNP C T uc001dqj.3 ARHGAP29_uc009w... Hybrid_Cap... view
ARHGEF10 p.R799P 8 1871948 1871948 LCLC97TM1_LUNG 37 Missense_Mutation SNP G C uc003wpr.2 ARHGEF10_uc003w... Hybrid_Cap... view
AURKC 19 57742494 57742507 LCLC97TM1_LUNG 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCR 22 23631813 23631814 LCLC97TM1_LUNG 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 LCLC97TM1_LUNG 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR p.G939V 22 23634761 23634761 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap... view
CACNB2 10 18828721 18828722 LCLC97TM1_LUNG 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CASP4 11 104819546 104819547 LCLC97TM1_LUNG 37 Intron Ins - AGACACAC rs33910737;rs113139978 uc001pid.1 CASP4_uc001pib.... Hybrid_Cap...
CDK14 p.S467I 7 90747485 90747485 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc003uky.2 CDK14_uc003ukz.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 LCLC97TM1_LUNG 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
COL1A1 p.D666V 17 48269372 48269372 LCLC97TM1_LUNG 37 Missense_Mutation SNP T A uc002iqm.2 Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 LCLC97TM1_LUNG 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CUBN p.R43L 10 17171244 17171244 LCLC97TM1_LUNG 37 Missense_Mutation SNP C A uc001ioo.2 Hybrid_Cap... view
CXCL12 10 44873992 44873993 LCLC97TM1_LUNG 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DACH1 13 72014625 72014626 LCLC97TM1_LUNG 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DNAH8 6 38952247 38952250 LCLC97TM1_LUNG 37 Intron Del CACA - uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
DST 6 56331082 56331082 LCLC97TM1_LUNG 37 Intron SNP C T uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
EDN1 6 12296190 12296190 LCLC97TM1_LUNG 37 Intron SNP A T uc003nae.3 EDN1_uc003nad.2... Hybrid_Cap... view
EIF3A p.W413C 10 120820345 120820345 LCLC97TM1_LUNG 37 Missense_Mutation SNP C G uc001ldu.2 EIF3A_uc010qsu.... Hybrid_Cap... view
EIF4E 4 99808137 99808141 LCLC97TM1_LUNG 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EIF4G1 p.L1282H 3 184045661 184045661 LCLC97TM1_LUNG 37 Missense_Mutation SNP T A uc010hxx.2 EIF4G1_uc003fnp... Hybrid_Cap... view
EP300 22 41574970 41574972 LCLC97TM1_LUNG 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA5 p.T544R 4 66280058 66280058 LCLC97TM1_LUNG 37 Missense_Mutation SNP G C uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 LCLC97TM1_LUNG 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB3 p.Q853R 3 184298779 184298779 LCLC97TM1_LUNG 37 Missense_Mutation SNP A G uc003foz.2 Hybrid_Cap... view
ERBB4 p.A1083S 2 212251812 212251812 LCLC97TM1_LUNG 37 Missense_Mutation SNP C A uc002veg.1 ERBB4_uc002veh.... Hybrid_Cap... view
ERCC2 19 45854768 45854768 LCLC97TM1_LUNG 37 3'UTR Del G - uc002pbj.2 KLC3_uc002pbf.1... Hybrid_Cap...
FANCA p.S681C 16 89838195 89838195 LCLC97TM1_LUNG 37 Missense_Mutation SNP G C uc002fou.1 FANCA_uc010vpn.... Hybrid_Cap... view
FANCA 16 89865460 89865460 LCLC97TM1_LUNG 37 Intron SNP G T uc002fou.1 FANCA_uc010vpn.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 LCLC97TM1_LUNG 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 LCLC97TM1_LUNG 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FGFR4 p.E326K 5 176519704 176519704 LCLC97TM1_LUNG 37 Missense_Mutation SNP G A uc003mfl.2 FGFR4_uc003mfm.... Hybrid_Cap... view
FLI1 11 128638217 128638217 LCLC97TM1_LUNG 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNC p.G2121* 7 128493675 128493675 LCLC97TM1_LUNG 37 Nonsense_Mutation SNP G T uc003vnz.3 FLNC_uc003voa.3... Hybrid_Cap... view
FN1 2 216244182 216244185 LCLC97TM1_LUNG 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GLI1 p.G274C 12 57860080 57860080 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc001snx.2 GLI1_uc009zpq.2... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 LCLC97TM1_LUNG 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 LCLC97TM1_LUNG 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIN2B p.T121N 12 14018781 14018781 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc001rbt.2 Hybrid_Cap... view
GUCY2C 12 14827464 14827466 LCLC97TM1_LUNG 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HEPH p.E1036K X 65480002 65480002 LCLC97TM1_LUNG 37 Missense_Mutation SNP G A uc011moz.1 HEPH_uc004dwn.2... Hybrid_Cap... view
HIF1A 14 62213929 62213930 LCLC97TM1_LUNG 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 LCLC97TM1_LUNG 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSPB1 p.A203S 7 75933479 75933479 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc003uew.2 HSPB1_uc010ldj.... Hybrid_Cap... view
ICK p.Q295R 6 52878728 52878728 LCLC97TM1_LUNG 37 Missense_Mutation SNP T C uc003pbh.2 ICK_uc003pbi.2_... Hybrid_Cap... view
ILK 11 6630029 6630029 LCLC97TM1_LUNG 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
IRS2 p.S1154T 13 110434941 110434941 LCLC97TM1_LUNG 37 Missense_Mutation SNP A T uc001vqv.2 Hybrid_Cap... view
ITIH5L p.P842H X 54783982 54783982 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc004dtj.2 Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 LCLC97TM1_LUNG 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KRAS p.G12V 12 25398284 25398284 LCLC97TM1_LUNG 37 Missense_Mutation SNP C A uc001rgp.1 KRAS_uc001rgq.1... Hybrid_Cap... view
MAF 16 79628537 79628537 LCLC97TM1_LUNG 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MALT1 p.V632I 18 56411710 56411710 LCLC97TM1_LUNG 37 Missense_Mutation SNP G A uc002lhm.1 MALT1_uc002lhn.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 LCLC97TM1_LUNG 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 LCLC97TM1_LUNG 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K13 p.D886G 3 185198175 185198175 LCLC97TM1_LUNG 37 Missense_Mutation SNP A G uc010hyf.2 MAP3K13_uc011br... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 LCLC97TM1_LUNG 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 LCLC97TM1_LUNG 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MAPKBP1 15 42111753 42111754 LCLC97TM1_LUNG 37 Intron Ins - C rs3034891 uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MAST4 p.D935Y 5 66448539 66448539 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc003jut.1 MAST4_uc003juw.... Hybrid_Cap... view
MTUS2 p.V962F 13 29898797 29898797 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc001usl.3 Hybrid_Cap... view
MYST4 p.EEEE1083del 10 76781852 76781863 LCLC97TM1_LUNG 37 In_Frame_Del Del GAGGA... - rs11001248 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 LCLC97TM1_LUNG 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 LCLC97TM1_LUNG 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFIA 1 61921185 61921186 LCLC97TM1_LUNG 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NLRP1 17 5487394 5487394 LCLC97TM1_LUNG 37 5'UTR SNP C T uc002gci.2 NLRP1_uc002gcg.... Hybrid_Cap... view
NPR1 1 153665919 153665920 LCLC97TM1_LUNG 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.D43Y 19 50881073 50881073 LCLC97TM1_LUNG 37 Missense_Mutation SNP G T uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881820 50881821 LCLC97TM1_LUNG 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP214 9 134067556 134067557 LCLC97TM1_LUNG 37 Intron Ins - T rs66652901 uc004cag.2 NUP214_uc004cah... Hybrid_Cap...
ODZ1 p.E1450V X 123556244 123556244 LCLC97TM1_LUNG 37 Missense_Mutation SNP T A uc010nqy.2 ODZ1_uc011muj.1... Hybrid_Cap... view
PAX3 2 223158653 223158653 LCLC97TM1_LUNG 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PGGT1B 5 114548071 114548072 LCLC97TM1_LUNG 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PIK3CG p.T939N 7 106524655 106524655 LCLC97TM1_LUNG 37 Missense_Mutation SNP C A uc003vdv.3 PIK3CG_uc003vdu... Hybrid_Cap... view
PMS1 2 190670539 190670540 LCLC97TM1_LUNG 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 LCLC97TM1_LUNG 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG1 p.T475A 10 54040568 54040568 LCLC97TM1_LUNG 37 Missense_Mutation SNP A G uc001jjo.2 PRKG1_uc001jjm.... Hybrid_Cap... view
RAPGEF2 4 160189200 160189201 LCLC97TM1_LUNG 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RPS6KA5 14 91360733 91360734 LCLC97TM1_LUNG 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KB1 17 58024224 58024225 LCLC97TM1_LUNG 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
SCARA5 8 27729298 27729298 LCLC97TM1_LUNG 37 3'UTR SNP G C uc003xgj.2 SCARA5_uc010luz... Hybrid_Cap... view
SEMA3B 3 50311089 50311089 LCLC97TM1_LUNG 37 Intron SNP A T uc003cyu.2 SEMA3B_uc003cyt... Hybrid_Cap... view
SET p.I48V 9 131453478 131453478 LCLC97TM1_LUNG 37 Missense_Mutation SNP A G uc004bvt.3 SET_uc004bvu.3_... Hybrid_Cap... view
SLC22A15 1 116574409 116574409 LCLC97TM1_LUNG 37 Intron SNP G A uc001egb.3 SLC22A15_uc001e... Hybrid_Cap... view
SRMS p.V107M 20 62178498 62178498 LCLC97TM1_LUNG 37 Missense_Mutation SNP C T uc002yfi.1 Hybrid_Cap... view
STARD3 17 37809750 37809750 LCLC97TM1_LUNG 37 5'UTR SNP G A uc002hsd.2 STARD3_uc010weg... Hybrid_Cap... view
STK25 2 242435659 242435662 LCLC97TM1_LUNG 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
TEC 4 48139307 48139310 LCLC97TM1_LUNG 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TLK1 2 171850178 171850179 LCLC97TM1_LUNG 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TMEM123 11 102269398 102269398 LCLC97TM1_LUNG 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNKS2 10 93622951 93622959 LCLC97TM1_LUNG 37 3'UTR Del GTTTT... - rs115539654 uc001khp.2 Hybrid_Cap...
TNN p.N871I 1 175087922 175087922 LCLC97TM1_LUNG 37 Missense_Mutation SNP A T uc001gkl.1 Hybrid_Cap... view
TP53 p.P34fs 17 7579585 7579585 LCLC97TM1_LUNG 37 Frame_Shift_Del Del G - rs11575998 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap...
TP63 3 189507518 189507519 LCLC97TM1_LUNG 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIM33 1 114940211 114940212 LCLC97TM1_LUNG 37 3'UTR Ins - T rs66490349 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPS1 8 116635872 116635873 LCLC97TM1_LUNG 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTBK1 p.A667V 6 43250478 43250478 LCLC97TM1_LUNG 37 Missense_Mutation SNP C T uc003ouq.1 Hybrid_Cap... view
ULK1 p.N559K 12 132400503 132400503 LCLC97TM1_LUNG 37 Missense_Mutation SNP C G uc001uje.2 Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 LCLC97TM1_LUNG 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
YWHAQ 2 9770589 9770590 LCLC97TM1_LUNG 37 5'UTR Ins - CGGGGC uc002qzw.2 YWHAQ_uc002qzx.... Hybrid_Cap...