Annotation Summary for Cell Line: NCI-N87  

Cell line primary name: NCI-N87
Cell line aliases: N87
Gender: M
Site Primary: stomach
Histology: carcinoma
Hist Subtype1: NS
Notes:
Source: ATCC
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_D09_383712
SNP arrays: FASTS_p_NCLE_DNAAffy4_S_GenomeWideSNP_6_H11_335376
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in NCI-N87

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM17 2 9630245 9630245 NCIN87_STOMACH 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 NCIN87_STOMACH 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAMTS18 p.R1053Q 16 77327004 77327004 NCIN87_STOMACH 37 Missense_Mutation SNP C T uc002ffc.3 ADAMTS18_uc010c... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 NCIN87_STOMACH 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 NCIN87_STOMACH 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 NCIN87_STOMACH 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 NCIN87_STOMACH 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
BMP4 14 54416601 54416602 NCIN87_STOMACH 37 3'UTR Ins - AT rs74495140;rs76335800 uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap...
CACNA1F p.815_815E>EE X 49076224 49076225 NCIN87_STOMACH 37 In_Frame_Ins Ins - TCC uc004dnb.2 CACNA1F_uc010ni... Hybrid_Cap...
CACNB2 10 18828721 18828722 NCIN87_STOMACH 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CLK2 1 155232978 155232979 NCIN87_STOMACH 37 3'UTR Del AA - uc001fjy.2 RAG1AP1_uc010pe... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 NCIN87_STOMACH 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 p.G520R 22 19220085 19220085 NCIN87_STOMACH 37 Missense_Mutation SNP C G uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 NCIN87_STOMACH 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CTNNA2 p.H552fs 2 80782932 80782932 NCIN87_STOMACH 37 Frame_Shift_Del Del A - uc010ysh.1 CTNNA2_uc010yse... Hybrid_Cap...
DACH1 13 72014625 72014626 NCIN87_STOMACH 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
EEF1D 8 144661906 144661907 NCIN87_STOMACH 37 3'UTR Ins - A uc003yyq.1 NAPRT1_uc003yym... Hybrid_Cap...
EP300 22 41574970 41574972 NCIN87_STOMACH 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
ETV1 7 14028708 14028708 NCIN87_STOMACH 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FANCI 15 89826092 89826092 NCIN87_STOMACH 37 Intron SNP C T uc010bnp.1 FANCI_uc002bnm.... Hybrid_Cap... view
FBXO43 8 101149727 101149727 NCIN87_STOMACH 37 Intron SNP G C uc003yjd.2 FBXO43_uc003yje... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 NCIN87_STOMACH 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 NCIN87_STOMACH 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FMN2 p.P1116del 1 240371434 240371436 NCIN87_STOMACH 37 In_Frame_Del Del CCT - uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 NCIN87_STOMACH 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 NCIN87_STOMACH 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 NCIN87_STOMACH 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HERC2 p.K73Q 15 28538139 28538139 NCIN87_STOMACH 37 Missense_Mutation SNP T G uc001zbj.2 HERC2_uc001zbl.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 NCIN87_STOMACH 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 NCIN87_STOMACH 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IL2 p.R58T 4 123377333 123377333 NCIN87_STOMACH 37 Missense_Mutation SNP C G uc003ier.2 Hybrid_Cap... view
ILK 11 6630029 6630029 NCIN87_STOMACH 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGA7 p.T1100M 12 56078969 56078969 NCIN87_STOMACH 37 Missense_Mutation SNP G A uc001shh.2 ITGA7_uc001shg.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 NCIN87_STOMACH 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 NCIN87_STOMACH 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
MAML2 p.663_664QQ>Q 11 95825204 95825206 NCIN87_STOMACH 37 In_Frame_Del Del TGC - uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 NCIN87_STOMACH 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 NCIN87_STOMACH 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K5 6 136878752 136878752 NCIN87_STOMACH 37 3'UTR Del T - rs79903899 uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MSH6 p.G624S 2 48026992 48026992 NCIN87_STOMACH 37 Missense_Mutation SNP G A uc002rwd.3 MSH6_uc002rwc.2... Hybrid_Cap... view
MSI2 17 55709379 55709380 NCIN87_STOMACH 37 Intron Ins - A rs60931600;rs28700576 uc002iuz.1 MSI2_uc010wnm.1... Hybrid_Cap...
MYH11 p.E331K 16 15865489 15865489 NCIN87_STOMACH 37 Missense_Mutation SNP C T uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 NCIN87_STOMACH 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
MYO3A p.F169S 10 26286185 26286185 NCIN87_STOMACH 37 Missense_Mutation SNP T C uc001isn.2 MYO3A_uc009xko.... Hybrid_Cap... view
MYST4 p.E1104del 10 76781906 76781908 NCIN87_STOMACH 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
MYT1 20 62871860 62871861 NCIN87_STOMACH 37 3'UTR Ins - CCGCA uc002yii.2 MYT1_uc002yij.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 NCIN87_STOMACH 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 NCIN87_STOMACH 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFKB1 p.D917_splice 4 103534740 103534741 NCIN87_STOMACH 37 Splice_Site_Ins Ins - A rs35795162 uc011cep.1 NFKB1_uc011ceq.... Hybrid_Cap...
NLRP3 p.L29V 1 247582181 247582181 NCIN87_STOMACH 37 Missense_Mutation SNP T G uc001icr.2 NLRP3_uc001ics.... Hybrid_Cap... view
NOTCH4 p.15_16LL>L 6 32191659 32191661 NCIN87_STOMACH 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NPR1 1 153665919 153665920 NCIN87_STOMACH 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NTRK3 p.E211V 15 88679831 88679831 NCIN87_STOMACH 37 Missense_Mutation SNP T A uc002bme.1 NTRK3_uc002bmh.... Hybrid_Cap... view
NUMA1 11 71718530 71718530 NCIN87_STOMACH 37 Intron Del T - uc001orl.1 NUMA1_uc001orj.... Hybrid_Cap...
NYNRIN p.A513T 14 24878537 24878537 NCIN87_STOMACH 37 Missense_Mutation SNP G A uc001wpf.3 Hybrid_Cap... view
PAX3 2 223065753 223065754 NCIN87_STOMACH 37 3'UTR Ins - AC rs72163163 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 NCIN87_STOMACH 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PCSK7 p.M419I 11 117090373 117090373 NCIN87_STOMACH 37 Missense_Mutation SNP C T uc001pqr.2 Hybrid_Cap... view
PDE4DIP p.R44T 1 145015957 145015957 NCIN87_STOMACH 37 Missense_Mutation SNP C G uc001elx.3 NBPF10_uc009wir... Hybrid_Cap... view
PDK4 7 95225628 95225628 NCIN87_STOMACH 37 5'UTR SNP G A uc003uoa.2 Hybrid_Cap... view
PIK3C2B 1 204393961 204393963 NCIN87_STOMACH 37 3'UTR Del GGT - uc001haw.2 PIK3C2B_uc010pq... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 NCIN87_STOMACH 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PMS1 2 190670539 190670540 NCIN87_STOMACH 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 NCIN87_STOMACH 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 NCIN87_STOMACH 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KB1 17 58024224 58024225 NCIN87_STOMACH 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
SCYL2 p.D527V 12 100720470 100720470 NCIN87_STOMACH 37 Missense_Mutation SNP A T uc001thn.2 SCYL2_uc009ztw.... Hybrid_Cap... view
SFRS3 6 36569921 36569921 NCIN87_STOMACH 37 3'UTR SNP C G uc003omj.2 SFRS3_uc003omk.... Hybrid_Cap... view
SIK3 p.H580Y 11 116734431 116734431 NCIN87_STOMACH 37 Missense_Mutation SNP G A uc001ppy.2 SIK3_uc001ppz.2... Hybrid_Cap... view
SLC45A3 p.I89I 1 205632652 205632652 NCIN87_STOMACH 37 Silent SNP G A uc001hda.1 SLC45A3_uc010pr... Hybrid_Cap... view
STK31 7 23872024 23872025 NCIN87_STOMACH 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TG p.V231L 8 133894160 133894160 NCIN87_STOMACH 37 Missense_Mutation SNP G T uc003ytw.2 Hybrid_Cap... view
TLK1 2 171850178 171850179 NCIN87_STOMACH 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TMEM123 11 102269398 102269398 NCIN87_STOMACH 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TMPRSS2 21 42837952 42837952 NCIN87_STOMACH 37 3'UTR Del G - uc010gor.2 TMPRSS2_uc002yz... Hybrid_Cap...
TOPBP1 p.L633V 3 133362168 133362168 NCIN87_STOMACH 37 Missense_Mutation SNP G C uc003eps.2 Hybrid_Cap... view
TP53 p.R248Q 17 7577538 7577538 NCIN87_STOMACH 37 Missense_Mutation SNP C T rs11540652 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 NCIN87_STOMACH 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TP63 3 189612368 189612368 NCIN87_STOMACH 37 3'UTR SNP C T uc003fry.2 TP63_uc003frz.2... Hybrid_Cap... view
TRADD p.S111S 16 67189376 67189376 NCIN87_STOMACH 37 Silent SNP C G uc002eri.1 TRADD_uc002erh.... Hybrid_Cap... view
TRIM42 p.I607L 3 140407343 140407343 NCIN87_STOMACH 37 Missense_Mutation SNP A C uc003eto.1 Hybrid_Cap... view
TRPM7 p.S1500del 15 50875341 50875343 NCIN87_STOMACH 37 In_Frame_Del Del CTA - rs77854453 uc001zyt.3 TRPM7_uc001zyr.... Hybrid_Cap...
TRPS1 8 116635872 116635873 NCIN87_STOMACH 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN p.E27910D 2 179415824 179415824 NCIN87_STOMACH 37 Missense_Mutation SNP T G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.G23730R 2 179431967 179431967 NCIN87_STOMACH 37 Missense_Mutation SNP C T rs72648205 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
UBE3B 12 109947357 109947358 NCIN87_STOMACH 37 Intron Ins - T uc001top.2 UBE3B_uc001toq.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 NCIN87_STOMACH 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WNK1 12 1018133 1018133 NCIN87_STOMACH 37 3'UTR SNP C A uc001qio.3 WNK1_uc001qip.3... Hybrid_Cap... view
ZMYM2 p.D977A 13 20637004 20637004 NCIN87_STOMACH 37 Missense_Mutation SNP A C uc001umr.2 ZMYM2_uc001ums.... Hybrid_Cap... view