Annotation Summary for Cell Line: NMC-G1  

Cell line primary name: NMC-G1
Cell line aliases:
Gender:
Site Primary: central_nervous_system
Histology: glioma
Hist Subtype1: NS
Notes:
Source: HSRRB
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_F01_383710
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_E01_411010
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in NMC-G1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 NMCG1_CENTRAL_N... 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABI1 10 27037488 27037488 NMCG1_CENTRAL_N... 37 3'UTR Del A - rs75446996 uc001isx.2 ABI1_uc001ite.2... Hybrid_Cap...
ABL2 1 179086419 179086420 NMCG1_CENTRAL_N... 37 Intron Ins - A rs72207641 uc001gmj.3 ABL2_uc010pnf.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 NMCG1_CENTRAL_N... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 NMCG1_CENTRAL_N... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 4 113347609 113347610 NMCG1_CENTRAL_N... 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK1 p.T1150fs 4 113360940 113360941 NMCG1_CENTRAL_N... 37 Frame_Shift_Del Del AG - uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALS2 2 202587706 202587707 NMCG1_CENTRAL_N... 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
ARAF p.R359_splice X 47428113 47428113 NMCG1_CENTRAL_N... 37 Splice_Site_SNP SNP G A uc011mlq.1 ARAF_uc011mln.1... Hybrid_Cap... view
ASPH p.A264_splice 8 62550924 62550925 NMCG1_CENTRAL_N... 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
BCR 22 23632777 23632778 NMCG1_CENTRAL_N... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BRAF p.V600E 7 140453136 140453136 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP A T rs113488022 uc003vwc.3 Hybrid_Cap... view
CACNB2 10 18828721 18828722 NMCG1_CENTRAL_N... 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CDK10 p.I220I 16 89760632 89760632 NMCG1_CENTRAL_N... 37 Silent SNP C T uc010cio.2 CDK10_uc010cip.... Hybrid_Cap... view
CDK11A p.P575T 1 1635549 1635549 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP G T uc009vks.2 CDK11B_uc001ags... Hybrid_Cap... view
CDK11B 1 1654066 1654068 NMCG1_CENTRAL_N... 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CDKN2A 9 21974409 21974409 NMCG1_CENTRAL_N... 37 Intron SNP C G uc003zpl.2 MTAP_uc003zpi.1... Hybrid_Cap... view
CHD9 p.S611C 16 53256603 53256603 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP C G uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap... view
CHRNA5 15 78885615 78885616 NMCG1_CENTRAL_N... 37 3'UTR Ins - TA rs72534078 uc002bdy.2 CHRNA3_uc002bea... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 NMCG1_CENTRAL_N... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 NMCG1_CENTRAL_N... 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSPG4 p.D187N 15 75982847 75982847 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP C T uc002baw.2 Hybrid_Cap... view
DAPK2 15 64221897 64221897 NMCG1_CENTRAL_N... 37 Intron SNP C T uc002amr.2 DAPK2_uc010uim.... Hybrid_Cap... view
DYRK1A 21 38884966 38884967 NMCG1_CENTRAL_N... 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EPHA6 3 97367230 97367231 NMCG1_CENTRAL_N... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB6 p.P488P 7 142564240 142564240 NMCG1_CENTRAL_N... 37 Silent SNP C T uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap... view
ERCC5 p.R733K 13 103514020 103514020 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP G A uc001vpu.1 ERCC5_uc010tjb.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 NMCG1_CENTRAL_N... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 NMCG1_CENTRAL_N... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 NMCG1_CENTRAL_N... 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FMO4 p.L26fs 1 171289040 171289041 NMCG1_CENTRAL_N... 37 Frame_Shift_Ins Ins - TGGA uc001gho.2 Hybrid_Cap...
FOXP1 3 71008341 71008342 NMCG1_CENTRAL_N... 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GADD45A 1 68153536 68153536 NMCG1_CENTRAL_N... 37 3'UTR SNP C T uc001ddz.1 GADD45A_uc009wb... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 NMCG1_CENTRAL_N... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 NMCG1_CENTRAL_N... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 NMCG1_CENTRAL_N... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HDAC2 6 114262077 114262080 NMCG1_CENTRAL_N... 37 3'UTR Del AAAC - rs3217728 uc003pwd.1 HDAC2_uc003pwc.... Hybrid_Cap...
HIF1A 14 62213929 62213930 NMCG1_CENTRAL_N... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 NMCG1_CENTRAL_N... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IGF1R 15 99192755 99192763 NMCG1_CENTRAL_N... 37 5'UTR Del TTTTT... - uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap...
ILK 11 6630029 6630029 NMCG1_CENTRAL_N... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
IRF4 p.I444V 6 407572 407572 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP A G uc003msz.3 IRF4_uc003mta.3... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 NMCG1_CENTRAL_N... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LATS2 13 21620222 21620223 NMCG1_CENTRAL_N... 37 5'UTR Ins - A rs61240127;rs115723063 uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap...
MAF 16 79628537 79628537 NMCG1_CENTRAL_N... 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAGEB16 p.N122fs X 35820679 35820679 NMCG1_CENTRAL_N... 37 Frame_Shift_Del Del T - uc010ngt.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 NMCG1_CENTRAL_N... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 NMCG1_CENTRAL_N... 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 NMCG1_CENTRAL_N... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 NMCG1_CENTRAL_N... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MCF2 X 138724842 138724842 NMCG1_CENTRAL_N... 37 Intron Del A - uc011mwo.1 MCF2_uc004fau.2... Hybrid_Cap...
MCL1 1 150549737 150549744 NMCG1_CENTRAL_N... 37 3'UTR Del GCTAG... - rs116997851 uc001euz.2 MCL1_uc010pch.1... Hybrid_Cap...
MYH11 p.D1969D 16 15797881 15797881 NMCG1_CENTRAL_N... 37 Silent SNP G A uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYH11 p.A1705T 16 15813156 15813156 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP C T uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 NMCG1_CENTRAL_N... 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
MYLK3 p.D435H 16 46766279 46766279 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP C G uc002eei.3 MYLK3_uc010vge.... Hybrid_Cap... view
MYST4 p.E1104del 10 76781906 76781908 NMCG1_CENTRAL_N... 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 NMCG1_CENTRAL_N... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 NMCG1_CENTRAL_N... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEDD9 p.S296N 6 11191215 11191215 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP C T uc003mzv.2 NEDD9_uc010joz.... Hybrid_Cap... view
NPM1 5 170837734 170837734 NMCG1_CENTRAL_N... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 NMCG1_CENTRAL_N... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NPRL2 3 50384978 50384978 NMCG1_CENTRAL_N... 37 3'UTR Del C - rs75013672 uc003daj.1 ZMYND10_uc003da... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 NMCG1_CENTRAL_N... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223158653 223158653 NMCG1_CENTRAL_N... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PCDH15 10 55581490 55581491 NMCG1_CENTRAL_N... 37 3'UTR Ins - A uc010qhy.1 PCDH15_uc010qhq... Hybrid_Cap...
PCM1 8 17813217 17813218 NMCG1_CENTRAL_N... 37 Intron Ins - T rs75667844 uc003wyi.3 PCM1_uc011kyh.1... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 NMCG1_CENTRAL_N... 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 NMCG1_CENTRAL_N... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDGFRA 4 55131002 55131002 NMCG1_CENTRAL_N... 37 Intron Del A - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 NMCG1_CENTRAL_N... 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PMS1 2 190670539 190670540 NMCG1_CENTRAL_N... 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 NMCG1_CENTRAL_N... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RIOK2 p.S335L 5 96503564 96503564 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP G A uc003kmz.2 RIOK2_uc003kna.... Hybrid_Cap... view
ROBO2 3 77666937 77666937 NMCG1_CENTRAL_N... 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RPS6KA5 14 91360733 91360734 NMCG1_CENTRAL_N... 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KB1 17 58024224 58024225 NMCG1_CENTRAL_N... 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 NMCG1_CENTRAL_N... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SSU72 1 1477324 1477325 NMCG1_CENTRAL_N... 37 3'UTR Del CA - rs72502747 uc001agd.2 C1orf70_uc009vk... Hybrid_Cap...
STAT5A 17 40462797 40462798 NMCG1_CENTRAL_N... 37 3'UTR Del TG - uc002hzj.1 STAT5A_uc010cya... Hybrid_Cap...
STK31 7 23872024 23872025 NMCG1_CENTRAL_N... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TIAM1 p.Q1401R 21 32496944 32496944 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP T C uc002yow.1 TIAM1_uc011adk.... Hybrid_Cap... view
TP63 3 189507518 189507519 NMCG1_CENTRAL_N... 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIP11 p.I89T 14 92491700 92491700 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP A G uc001xzy.2 Hybrid_Cap... view
TRPS1 8 116635872 116635873 NMCG1_CENTRAL_N... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 NMCG1_CENTRAL_N... 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.R15319H 2 179470362 179470362 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN 2 179612267 179612267 NMCG1_CENTRAL_N... 37 Intron SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
UBE3B 12 109927828 109927828 NMCG1_CENTRAL_N... 37 Intron SNP C A uc001top.2 UBE3B_uc001toq.... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 NMCG1_CENTRAL_N... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VPS13B p.C600Y 8 100155349 100155349 NMCG1_CENTRAL_N... 37 Missense_Mutation SNP G A uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view