Annotation Summary for Cell Line: NUGC-4  

Cell line primary name: NUGC-4
Cell line aliases:
Gender:
Site Primary: stomach
Histology: carcinoma
Hist Subtype1: signet_ring_adenocarcinoma
Notes:
Source: RIKEN
Expression arrays: BUNDS_p_NCLE_RNA5_HG-U133_Plus_2_H06_419836
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_E04_411004
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in NUGC-4

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 NUGC4_STOMACH 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ACACB p.K1265_splice 12 109661618 109661618 NUGC4_STOMACH 37 Splice_Site_SNP SNP A G uc001tob.2 ACACB_uc001toc.... Hybrid_Cap... view
ADAM28 8 24211994 24211997 NUGC4_STOMACH 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 NUGC4_STOMACH 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AURKC 19 57742494 57742507 NUGC4_STOMACH 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BRCA1 p.I456T 17 41246181 41246181 NUGC4_STOMACH 37 Missense_Mutation SNP A G rs80357360 uc002ict.2 BRCA1_uc010whp.... Hybrid_Cap... view
CACNB2 10 18828721 18828722 NUGC4_STOMACH 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CAD p.S79L 2 27444099 27444099 NUGC4_STOMACH 37 Missense_Mutation SNP C T uc002rji.2 CAD_uc010eyw.2_... Hybrid_Cap... view
CAMK2A 5 149602223 149602224 NUGC4_STOMACH 37 3'UTR Del AC - uc003lrt.2 CAMK2A_uc003lrs... Hybrid_Cap...
CAMKK2 12 121698269 121698269 NUGC4_STOMACH 37 Intron SNP A G uc001tzu.2 CAMKK2_uc001tzt... Hybrid_Cap... view
CARD14 17 78182154 78182154 NUGC4_STOMACH 37 3'UTR SNP C T uc002jxw.1 CARD14_uc002jxt... Hybrid_Cap... view
CDH1 p.D257V 16 68844182 68844182 NUGC4_STOMACH 37 Missense_Mutation SNP A T uc002ewg.1 CDH1_uc010vlj.1... Hybrid_Cap... view
CDK16 p.A511T X 47086802 47086802 NUGC4_STOMACH 37 Missense_Mutation SNP G A uc011mll.1 CDK16_uc011mli.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 NUGC4_STOMACH 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CUBN p.G1426R 10 17032407 17032407 NUGC4_STOMACH 37 Missense_Mutation SNP C T uc001ioo.2 Hybrid_Cap... view
DST p.R4715W 6 56357782 56357782 NUGC4_STOMACH 37 Missense_Mutation SNP G A uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
EGF p.E1134fs 4 110932389 110932390 NUGC4_STOMACH 37 Frame_Shift_Ins Ins - C rs11569144 uc003hzy.3 EGF_uc011cfu.1_... Hybrid_Cap...
EPHA6 3 97367230 97367231 NUGC4_STOMACH 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHA8 p.L143F 1 22902977 22902977 NUGC4_STOMACH 37 Missense_Mutation SNP C T uc001bfx.1 EPHA8_uc001bfw.... Hybrid_Cap... view
EPHB2 p.F178S 1 23111291 23111291 NUGC4_STOMACH 37 Missense_Mutation SNP T C uc009vqj.1 EPHB2_uc001bge.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 NUGC4_STOMACH 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 NUGC4_STOMACH 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FNBP1 p.N263_splice 9 132689471 132689472 NUGC4_STOMACH 37 Splice_Site_Ins Ins - A uc004byw.1 FNBP1_uc011mbv.... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 NUGC4_STOMACH 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 NUGC4_STOMACH 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIN2A p.Y1207H 16 9857782 9857782 NUGC4_STOMACH 37 Missense_Mutation SNP A G uc002czo.3 GRIN2A_uc010uym... Hybrid_Cap... view
GTSE1 p.L723V 22 46725974 46725974 NUGC4_STOMACH 37 Missense_Mutation SNP C G uc011aqy.1 GTSE1_uc011aqz.... Hybrid_Cap... view
GUCY2C 12 14827464 14827466 NUGC4_STOMACH 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIP1 p.G852R 7 75176242 75176242 NUGC4_STOMACH 37 Missense_Mutation SNP C G uc003uds.1 HIP1_uc011kfz.1... Hybrid_Cap... view
HMGA2 12 66309016 66309016 NUGC4_STOMACH 37 3'UTR SNP C A uc001ssu.1 HMGA2_uc001ssw.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 NUGC4_STOMACH 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 NUGC4_STOMACH 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
KIAA1804 p.R892W 1 233515426 233515426 NUGC4_STOMACH 37 Missense_Mutation SNP C T rs55681416 uc001hvt.3 KIAA1804_uc001h... Hybrid_Cap... view
LAMA1 p.Y2753H 18 6950921 6950921 NUGC4_STOMACH 37 Missense_Mutation SNP A G uc002knm.2 LAMA1_uc002knk.... Hybrid_Cap... view
LRRK2 p.L425F 12 40646803 40646803 NUGC4_STOMACH 37 Missense_Mutation SNP C T uc001rmg.3 LRRK2_uc001rmh.... Hybrid_Cap... view
LZTR1 p.P269R 22 21345931 21345931 NUGC4_STOMACH 37 Missense_Mutation SNP C G uc002zto.2 LZTR1_uc002ztn.... Hybrid_Cap... view
MAML2 p.Q346R 11 95826158 95826158 NUGC4_STOMACH 37 Missense_Mutation SNP T C uc001pfw.1 Hybrid_Cap... view
MAML3 4 140640422 140640422 NUGC4_STOMACH 37 3'UTR SNP T G uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 NUGC4_STOMACH 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 NUGC4_STOMACH 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 NUGC4_STOMACH 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MYH11 16 15797811 15797811 NUGC4_STOMACH 37 3'UTR SNP G T rs75821286 uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYLK 3 123332876 123332876 NUGC4_STOMACH 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 NUGC4_STOMACH 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 NUGC4_STOMACH 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 NUGC4_STOMACH 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 113075179 113075179 NUGC4_STOMACH 37 5'UTR SNP G T uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 NUGC4_STOMACH 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK3 p.S204_splice 13 52725278 52725279 NUGC4_STOMACH 37 Splice_Site_Ins Ins - A uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NF1 p.N510D 17 29546023 29546023 NUGC4_STOMACH 37 Missense_Mutation SNP A G uc002hgg.2 NF1_uc002hge.1_... Hybrid_Cap... view
NFIA 1 61921185 61921186 NUGC4_STOMACH 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NFKB1 p.D917_splice 4 103534740 103534741 NUGC4_STOMACH 37 Splice_Site_Ins Ins - A rs35795162 uc011cep.1 NFKB1_uc011ceq.... Hybrid_Cap...
NGF p.V107F 1 115829098 115829098 NUGC4_STOMACH 37 Missense_Mutation SNP C A uc001efu.1 Hybrid_Cap... view
NPR1 1 153665919 153665920 NUGC4_STOMACH 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 NUGC4_STOMACH 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223066017 223066018 NUGC4_STOMACH 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.A826Y 1 144906156 144906157 NUGC4_STOMACH 37 Missense_Mutation DNP GC TA uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 NUGC4_STOMACH 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 NUGC4_STOMACH 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDGFRA 4 55131002 55131002 NUGC4_STOMACH 37 Intron Del A - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 NUGC4_STOMACH 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2G p.M1220K 12 18715705 18715705 NUGC4_STOMACH 37 Missense_Mutation SNP T A uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap... view
PPP3CC p.N62I 8 22332602 22332602 NUGC4_STOMACH 37 Missense_Mutation SNP A T uc011kzi.1 PPP3CC_uc003xbr... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 NUGC4_STOMACH 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAPGEF2 4 160189200 160189201 NUGC4_STOMACH 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
ROR2 p.D644N 9 94486846 94486846 NUGC4_STOMACH 37 Missense_Mutation SNP C T rs55798732 uc004arj.1 ROR2_uc004ari.1... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 NUGC4_STOMACH 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KB1 17 58024224 58024225 NUGC4_STOMACH 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 NUGC4_STOMACH 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SMAD3 p.V377I 15 67479822 67479822 NUGC4_STOMACH 37 Missense_Mutation SNP G A uc002aqj.2 SMAD3_uc010ujr.... Hybrid_Cap... view
SMG1 p.R75T 16 18908147 18908147 NUGC4_STOMACH 37 Missense_Mutation SNP C G uc002dfm.2 SMG1_uc010bwb.2... Hybrid_Cap... view
SPEN p.S2306del 1 16259648 16259650 NUGC4_STOMACH 37 In_Frame_Del Del AGC - uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap...
STK31 7 23872024 23872025 NUGC4_STOMACH 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TBCK p.R807C 4 107016791 107016791 NUGC4_STOMACH 37 Missense_Mutation SNP G A uc010ilv.2 TBCK_uc003hyb.2... Hybrid_Cap... view
TNFRSF10B p.L225fs 8 22885917 22885917 NUGC4_STOMACH 37 Frame_Shift_Del Del C - uc003xcu.2 TNFRSF10B_uc003... Hybrid_Cap...
TNFSF10 p.E236D 3 172224420 172224420 NUGC4_STOMACH 37 Missense_Mutation SNP T G uc003fid.2 TNFSF10_uc003fi... Hybrid_Cap... view
TNIK 3 170781570 170781570 NUGC4_STOMACH 37 3'UTR SNP A G uc003fhh.2 TNIK_uc003fhi.2... Hybrid_Cap... view
TRIM33 1 114940212 114940212 NUGC4_STOMACH 37 3'UTR Del T - uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPS1 8 116635872 116635873 NUGC4_STOMACH 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 NUGC4_STOMACH 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VEGFC p.I107K 4 177650728 177650728 NUGC4_STOMACH 37 Missense_Mutation SNP A T uc003ius.1 Hybrid_Cap... view
VPS13B p.G490D 8 100147867 100147867 NUGC4_STOMACH 37 Missense_Mutation SNP G A uc003yiv.2 VPS13B_uc003yiw... Hybrid_Cap... view