Annotation Summary for Cell Line: OCUM-1  

Cell line primary name: OCUM-1
Cell line aliases:
Gender: F
Site Primary: stomach
Histology: carcinoma
Hist Subtype1: diffuse_adenocarcinoma
Notes:
Source: HSRRB
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_E07_383688
SNP arrays: LOBBY_p_NCLE_DNAAffy6_GenomeWideSNP_6_B03_437300
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in OCUM-1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 OCUM1_STOMACH 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK2 p.R364H 7 140378965 140378965 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc003vvy.1 ADCK2_uc003vvz.... Hybrid_Cap... view
AFF3 p.E765K 2 100209905 100209905 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc002taf.2 AFF3_uc002tag.2... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 OCUM1_STOMACH 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.M1311K 7 91651646 91651646 OCUM1_STOMACH 37 Missense_Mutation SNP T A uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap... view
ALPK1 4 113347609 113347610 OCUM1_STOMACH 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
AMHR2 p.S194R 12 53819316 53819316 OCUM1_STOMACH 37 Missense_Mutation SNP A C uc001scx.1 AMHR2_uc009zmy.... Hybrid_Cap... view
ARHGEF10 p.V987G 8 1877490 1877490 OCUM1_STOMACH 37 Missense_Mutation SNP T G uc003wpr.2 ARHGEF10_uc003w... Hybrid_Cap... view
ARID1A p.I1130fs 1 27097801 27097801 OCUM1_STOMACH 37 Frame_Shift_Del Del C - uc001bmv.1 ARID1A_uc001bmt... Hybrid_Cap...
AURKC 19 57742494 57742507 OCUM1_STOMACH 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCL10 p.T162M 1 85733527 85733527 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc001dkz.2 Hybrid_Cap... view
BMP2K p.QQQ484del 4 79792137 79792145 OCUM1_STOMACH 37 In_Frame_Del Del CAGCA... - rs17855588 uc003hlk.2 BMP2K_uc010ijl.... Hybrid_Cap...
C15ORF2 p.G299R 15 24921909 24921909 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc001ywo.2 Hybrid_Cap... view
CACNB2 10 18828721 18828722 OCUM1_STOMACH 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CDH1 p.G212E 16 68842699 68842699 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc002ewg.1 CDH1_uc010vlj.1... Hybrid_Cap... view
CDKN2A 9 21968115 21968115 OCUM1_STOMACH 37 3'UTR SNP A G uc003zpl.2 MTAP_uc003zpi.1... Hybrid_Cap... view
CHIC2 4 54876132 54876132 OCUM1_STOMACH 37 3'UTR Del C - rs4437313 uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 OCUM1_STOMACH 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 OCUM1_STOMACH 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 OCUM1_STOMACH 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CTNNB1 p.S45C 3 41266137 41266137 OCUM1_STOMACH 37 Missense_Mutation SNP C G uc010hia.1 CTNNB1_uc003ckp... Hybrid_Cap... view
CYLD 16 50820672 50820673 OCUM1_STOMACH 37 Intron Ins - A rs117241863 uc002egp.1 CYLD_uc002ego.2... Hybrid_Cap...
DACH1 13 72014625 72014626 OCUM1_STOMACH 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DIP2C 10 428447 428448 OCUM1_STOMACH 37 Intron Del AG - uc001ifp.2 DIP2C_uc009xhj.... Hybrid_Cap...
DNAH8 p.M3824I 6 38913358 38913358 OCUM1_STOMACH 37 Missense_Mutation SNP G T uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap... view
EGF p.E1134fs 4 110932389 110932390 OCUM1_STOMACH 37 Frame_Shift_Ins Ins - C rs11569144 uc003hzy.3 EGF_uc011cfu.1_... Hybrid_Cap...
EHBP1 2 62934215 62934215 OCUM1_STOMACH 37 5'UTR SNP A T uc002sby.2 EHBP1_uc010fcp.... Hybrid_Cap... view
EIF4A2 3 186506816 186506816 OCUM1_STOMACH 37 Intron SNP A T uc003fqu.2 EIF4A2_uc003fqs... Hybrid_Cap... view
EIF5A p.P112R 17 7214416 7214416 OCUM1_STOMACH 37 Missense_Mutation SNP C G uc002gfr.2 EIF5A_uc010vtv.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 OCUM1_STOMACH 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPS15 1 51822220 51822220 OCUM1_STOMACH 37 3'UTR Del A - uc001csq.1 EPS15_uc009vyz.... Hybrid_Cap...
ERCC6 p.L799L 10 50682274 50682274 OCUM1_STOMACH 37 Silent SNP A G uc001jhs.3 ERCC6_uc009xod.... Hybrid_Cap... view
ERCC6 p.V99I 10 50740716 50740716 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc001jhs.3 PGBD3_uc009xoe.... Hybrid_Cap... view
ETV1 7 14028708 14028708 OCUM1_STOMACH 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
F8 p.Y1699F X 154156969 154156969 OCUM1_STOMACH 37 Missense_Mutation SNP T A rs28935203 uc004fmt.2 Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 OCUM1_STOMACH 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 OCUM1_STOMACH 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FOXP1 3 71008341 71008342 OCUM1_STOMACH 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GLI3 p.S1063F 7 42005483 42005483 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc011kbh.1 GLI3_uc011kbg.1... Hybrid_Cap... view
GPC3 X 132888208 132888208 OCUM1_STOMACH 37 Intron Del A - uc010nrn.1 GPC3_uc004exd.1... Hybrid_Cap...
GRIA3 X 122318386 122318387 OCUM1_STOMACH 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 OCUM1_STOMACH 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HEPH X 65390295 65390295 OCUM1_STOMACH 37 Intron SNP T C rs2272888 uc011moz.1 HEPH_uc004dwn.2... Hybrid_Cap... view
HIF1A 14 62213929 62213930 OCUM1_STOMACH 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HIP1 7 75167366 75167366 OCUM1_STOMACH 37 3'UTR SNP G A uc003uds.1 HIP1_uc011kfz.1... Hybrid_Cap... view
HNF1A 12 121434630 121434631 OCUM1_STOMACH 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IGF1R 15 99192755 99192763 OCUM1_STOMACH 37 5'UTR Del TTTTT... - uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap...
ILK 11 6630029 6630029 OCUM1_STOMACH 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INHBA p.R307Q 7 41729609 41729609 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc003thq.2 INHBA_uc003thr.... Hybrid_Cap... view
IRS1 p.H121fs 2 227663094 227663094 OCUM1_STOMACH 37 Frame_Shift_Del Del G - uc002voh.3 Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 OCUM1_STOMACH 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LAMA1 p.G2210E 18 6973201 6973201 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc002knm.2 LAMA1_uc010wzj.... Hybrid_Cap... view
LATS2 13 21620222 21620223 OCUM1_STOMACH 37 5'UTR Ins - A rs61240127;rs115723063 uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap...
MAF 16 79628537 79628537 OCUM1_STOMACH 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAGEB16 p.N122fs X 35820679 35820679 OCUM1_STOMACH 37 Frame_Shift_Del Del T - uc010ngt.1 Hybrid_Cap...
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 OCUM1_STOMACH 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 OCUM1_STOMACH 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 OCUM1_STOMACH 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP2K1 p.Q56P 15 66727451 66727451 OCUM1_STOMACH 37 Missense_Mutation SNP A C uc010bhq.2 MAP2K1_uc010ujp... Hybrid_Cap... view
MAP2K3 17 21217726 21217726 OCUM1_STOMACH 37 3'UTR SNP T C uc002gys.2 MAP2K3_uc002gyt... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 OCUM1_STOMACH 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAST1 p.A1308V 19 12984894 12984894 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc002mvm.2 Hybrid_Cap... view
MCL1 1 150549737 150549744 OCUM1_STOMACH 37 3'UTR Del GCTAG... - rs116997851 uc001euz.2 MCL1_uc010pch.1... Hybrid_Cap...
MLLT1 p.R206H 19 6222625 6222625 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc002mek.2 Hybrid_Cap... view
MYH1 p.F250L 17 10416998 10416998 OCUM1_STOMACH 37 Missense_Mutation SNP G T uc002gmo.2 Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 OCUM1_STOMACH 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 OCUM1_STOMACH 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 OCUM1_STOMACH 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 OCUM1_STOMACH 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 OCUM1_STOMACH 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPM1 5 170837615 170837615 OCUM1_STOMACH 37 3'UTR SNP A C uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap... view
NPM1 5 170837734 170837734 OCUM1_STOMACH 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 OCUM1_STOMACH 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 OCUM1_STOMACH 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NTRK3 p.V21F 15 88799324 88799324 OCUM1_STOMACH 37 Missense_Mutation SNP C A uc002bme.1 NTRK3_uc002bmh.... Hybrid_Cap... view
ODZ1 p.S1430F X 123556304 123556304 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc010nqy.2 ODZ1_uc011muj.1... Hybrid_Cap... view
PAX3 2 223066017 223066018 OCUM1_STOMACH 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 OCUM1_STOMACH 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PGR 11 100933598 100933599 OCUM1_STOMACH 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 OCUM1_STOMACH 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 OCUM1_STOMACH 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PLCG2 16 81954996 81954997 OCUM1_STOMACH 37 Intron Ins - T uc002fgt.2 PLCG2_uc010chg.... Hybrid_Cap...
PPM1E p.M608T 17 57057947 57057947 OCUM1_STOMACH 37 Missense_Mutation SNP T C uc002iwx.2 PPM1E_uc010ddd.... Hybrid_Cap... view
PRKCA 17 64298959 64298960 OCUM1_STOMACH 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 OCUM1_STOMACH 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RASGRF1 15 79277150 79277151 OCUM1_STOMACH 37 Intron Ins - C rs67045840;rs77640668 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap...
RBPJ 4 26431822 26431822 OCUM1_STOMACH 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 OCUM1_STOMACH 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KA5 14 91360733 91360734 OCUM1_STOMACH 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
SACS p.R3419H 13 23907759 23907759 OCUM1_STOMACH 37 Missense_Mutation SNP C T uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
SKIL p.I192V 3 170078693 170078693 OCUM1_STOMACH 37 Missense_Mutation SNP A G uc003fgu.2 SKIL_uc011bps.1... Hybrid_Cap... view
SORL1 p.F865V 11 121428044 121428044 OCUM1_STOMACH 37 Missense_Mutation SNP T G uc001pxx.2 Hybrid_Cap... view
SOX10 p.G41V 22 38379670 38379670 OCUM1_STOMACH 37 Missense_Mutation SNP C A uc003aun.1 POLR2F_uc003aum... Hybrid_Cap... view
SPEN p.P3008Q 1 16261758 16261758 OCUM1_STOMACH 37 Missense_Mutation SNP C A uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap... view
STK31 7 23872024 23872025 OCUM1_STOMACH 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TCERG1L 10 132891378 132891378 OCUM1_STOMACH 37 3'UTR SNP G A uc001lkp.2 Hybrid_Cap... view
TEC 4 48139307 48139310 OCUM1_STOMACH 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TERT p.P614P 5 1280381 1280381 OCUM1_STOMACH 37 Silent SNP G A uc003jcb.1 TERT_uc003jbz.1... Hybrid_Cap... view
TFG p.Q294H 3 100467054 100467054 OCUM1_STOMACH 37 Missense_Mutation SNP A C uc003due.2 TFG_uc003duf.2_... Hybrid_Cap... view
TGFBR2 p.R562C 3 30732996 30732996 OCUM1_STOMACH 37 Missense_Mutation SNP C T rs104893809 uc003cen.2 TGFBR2_uc003ceo... Hybrid_Cap... view
TMEM123 11 102269398 102269398 OCUM1_STOMACH 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNFRSF10B p.N134S 8 22887198 22887198 OCUM1_STOMACH 37 Missense_Mutation SNP T C uc003xcu.2 TNFRSF10B_uc003... Hybrid_Cap... view
TP53BP1 p.S335C 15 43767844 43767844 OCUM1_STOMACH 37 Missense_Mutation SNP G C uc001zrr.3 TP53BP1_uc010ud... Hybrid_Cap... view
TP63 3 189507518 189507519 OCUM1_STOMACH 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIM33 1 114940211 114940212 OCUM1_STOMACH 37 3'UTR Ins - T rs66490349 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRIM33 p.A322V 1 114976314 114976314 OCUM1_STOMACH 37 Missense_Mutation SNP G A uc001eew.2 TRIM33_uc010ows... Hybrid_Cap... view
TRIM37 p.V320G 17 57138453 57138453 OCUM1_STOMACH 37 Missense_Mutation SNP A C uc002iwy.3 TRIM37_uc002iwz... Hybrid_Cap... view
TRPS1 8 116635872 116635873 OCUM1_STOMACH 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 OCUM1_STOMACH 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 OCUM1_STOMACH 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WRN p.R369* 8 30938648 30938648 OCUM1_STOMACH 37 Nonsense_Mutation SNP C T rs17847577 uc003xio.3 WRN_uc011lbd.1_... Hybrid_Cap... view