Annotation Summary for Cell Line: PSN1  

Cell line primary name: PSN1
Cell line aliases:
Gender:
Site Primary: pancreas
Histology: carcinoma
Hist Subtype1: ductal_carcinoma
Notes: Identical lines: GR-M and PSN1 share high SNP identity and are likely to be really PSN1 (pancreas)
Source: ECACC
Expression arrays: PARES_p_NCLE_RNA_Redo_HG-U133_Plus_2_E08_257708
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_B02_293306
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in PSN1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 PSN1_PANCREAS 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
AAK1 p.H189R 2 69759263 69759263 PSN1_PANCREAS 37 Missense_Mutation SNP T C uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap... view
ADAM28 p.R545C 8 24197044 24197044 PSN1_PANCREAS 37 Missense_Mutation SNP C T uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap... view
ADAM28 8 24211994 24211997 PSN1_PANCREAS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 p.M210V 14 78365488 78365488 PSN1_PANCREAS 37 Missense_Mutation SNP A G uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap... view
ADCK5 p.C318Y 8 145617005 145617005 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc003zch.2 ADCK5_uc003zcg.... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 PSN1_PANCREAS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALDH7A1 p.G497E 5 125882091 125882091 PSN1_PANCREAS 37 Missense_Mutation SNP C T uc003ktx.2 ALDH7A1_uc003kt... Hybrid_Cap... view
ARNT p.L490L 1 150790431 150790431 PSN1_PANCREAS 37 Silent SNP T C uc001evr.1 ARNT_uc010pck.1... Hybrid_Cap... view
ATR p.R109W 3 142281919 142281919 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc003eux.3 Hybrid_Cap... view
AURKC 19 57742494 57742507 PSN1_PANCREAS 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BRD3 p.P23A 9 136918533 136918533 PSN1_PANCREAS 37 Missense_Mutation SNP G C uc004cew.2 BRD3_uc004cex.2... Hybrid_Cap... view
CACNB2 10 18828721 18828722 PSN1_PANCREAS 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CASP8 p.P523L 2 202151268 202151268 PSN1_PANCREAS 37 Missense_Mutation SNP C T uc002uxt.1 CASP8_uc002uxp.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 PSN1_PANCREAS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 PSN1_PANCREAS 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
DDR2 1 162750211 162750212 PSN1_PANCREAS 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DGKB 7 14216330 14216332 PSN1_PANCREAS 37 Intron Del AAC - uc003ssz.2 DGKB_uc011jxt.1... Hybrid_Cap...
DYRK1A 21 38884966 38884967 PSN1_PANCREAS 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EIF3H p.Y134C 8 117671150 117671150 PSN1_PANCREAS 37 Missense_Mutation SNP T C uc003yob.2 EIF3H_uc003yoa.... Hybrid_Cap... view
EPHA4 2 222290623 222290624 PSN1_PANCREAS 37 3'UTR Ins - T uc002vmq.2 EPHA4_uc002vmr.... Hybrid_Cap...
EPHA6 3 97367230 97367231 PSN1_PANCREAS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ERCC6 p.L799L 10 50682274 50682274 PSN1_PANCREAS 37 Silent SNP A G uc001jhs.3 ERCC6_uc009xod.... Hybrid_Cap... view
EXT1 8 118811869 118811869 PSN1_PANCREAS 37 3'UTR SNP G C uc003yok.1 Hybrid_Cap... view
FANCE p.L331V 6 35426095 35426095 PSN1_PANCREAS 37 Missense_Mutation SNP C G rs45468994 uc003oko.1 FANCE_uc010jvw.... Hybrid_Cap... view
FBLN5 14 92413745 92413745 PSN1_PANCREAS 37 5'UTR Del C - uc010aue.2 FBLN5_uc010aud.... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 PSN1_PANCREAS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR2 10 123239360 123239360 PSN1_PANCREAS 37 3'UTR SNP G A uc010qtj.1 FGFR2_uc010qtg.... Hybrid_Cap... view
FGFR2 p.P814T 10 123239400 123239400 PSN1_PANCREAS 37 Missense_Mutation SNP G T uc010qtj.1 FGFR2_uc010qtg.... Hybrid_Cap... view
FGFR3 4 1809128 1809129 PSN1_PANCREAS 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 PSN1_PANCREAS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 PSN1_PANCREAS 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 PSN1_PANCREAS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 PSN1_PANCREAS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRK4 p.K527I 4 3040137 3040137 PSN1_PANCREAS 37 Missense_Mutation SNP A T uc003ggn.1 GRK4_uc003ggo.1... Hybrid_Cap... view
HIF1A 14 62213929 62213930 PSN1_PANCREAS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HMGA2 12 66345284 66345284 PSN1_PANCREAS 37 3'UTR SNP G A uc001ssw.1 HMGA2_uc001ssx.... Hybrid_Cap... view
HSP90AA1 p.T317I 14 102551714 102551714 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc001ykv.3 HSP90AA1_uc001y... Hybrid_Cap... view
ILK 11 6630029 6630029 PSN1_PANCREAS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 PSN1_PANCREAS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 PSN1_PANCREAS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KRAS p.G12R 12 25398285 25398285 PSN1_PANCREAS 37 Missense_Mutation SNP C G uc001rgp.1 KRAS_uc001rgq.1... Hybrid_Cap... view
LAMA1 p.G919R 18 7017330 7017330 PSN1_PANCREAS 37 Missense_Mutation SNP C G uc002knm.2 LAMA1_uc010wzj.... Hybrid_Cap... view
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 PSN1_PANCREAS 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 PSN1_PANCREAS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 PSN1_PANCREAS 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 PSN1_PANCREAS 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 PSN1_PANCREAS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 PSN1_PANCREAS 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MECOM p.E27Q 3 169099271 169099271 PSN1_PANCREAS 37 Missense_Mutation SNP C G uc011bpj.1 MECOM_uc003ffl.... Hybrid_Cap... view
MMP1 p.P307L 11 102663449 102663449 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc001phi.2 MMP1_uc010ruv.1... Hybrid_Cap... view
MMP8 p.E126D 11 102592463 102592463 PSN1_PANCREAS 37 Missense_Mutation SNP C G uc001phe.2 MMP8_uc010rut.1... Hybrid_Cap... view
MTUS2 p.R892_splice 13 29675108 29675108 PSN1_PANCREAS 37 Splice_Site_SNP SNP G A uc001usl.3 Hybrid_Cap... view
MYLK 3 123332876 123332876 PSN1_PANCREAS 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
MYLK p.E1066del 3 123419117 123419119 PSN1_PANCREAS 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
NCAM1 11 112832307 112832308 PSN1_PANCREAS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 PSN1_PANCREAS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK2 1 211848863 211848865 PSN1_PANCREAS 37 5'UTR Del CGC - uc001hir.1 NEK2_uc001hiq.1... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 PSN1_PANCREAS 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61869770 61869770 PSN1_PANCREAS 37 Intron SNP C T uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap... view
NOTCH1 p.D740N 9 139407979 139407979 PSN1_PANCREAS 37 Missense_Mutation SNP C T uc004chz.2 NOTCH1_uc004cia... Hybrid_Cap... view
NPR1 1 153665919 153665920 PSN1_PANCREAS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NPRL2 3 50384978 50384978 PSN1_PANCREAS 37 3'UTR Del C - rs75013672 uc003daj.1 ZMYND10_uc003da... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 PSN1_PANCREAS 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR3C1 5 142780419 142780419 PSN1_PANCREAS 37 Splice_Site_SNP SNP T A uc003lmy.2 NR3C1_uc003lmz.... Hybrid_Cap... view
NUP214 p.I336_splice 9 134014666 134014666 PSN1_PANCREAS 37 Splice_Site_SNP SNP A T uc004cag.2 NUP214_uc004cah... Hybrid_Cap... view
PAX3 2 223066017 223066018 PSN1_PANCREAS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 PSN1_PANCREAS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.L1805L 1 144868024 144868024 PSN1_PANCREAS 37 Silent SNP C G uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDZRN4 p.R114Q 12 41900352 41900352 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc010skn.1 PDZRN4_uc001rmq... Hybrid_Cap... view
PMS1 2 190670539 190670540 PSN1_PANCREAS 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKCA 17 64800240 64800240 PSN1_PANCREAS 37 3'UTR SNP C T uc002jfp.1 Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 PSN1_PANCREAS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RASA1 p.T843N 5 86675592 86675592 PSN1_PANCREAS 37 Missense_Mutation SNP C A uc003kiw.2 RASA1_uc010jav.... Hybrid_Cap... view
RASGRF1 15 79277150 79277151 PSN1_PANCREAS 37 Intron Ins - C rs67045840;rs77640668 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap...
RBPJ 4 26431822 26431822 PSN1_PANCREAS 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 PSN1_PANCREAS 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
REM1 p.R267H 20 30072136 30072136 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc002wwa.2 NCRNA00028_uc01... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 PSN1_PANCREAS 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KA6 p.Q344H X 83362710 83362710 PSN1_PANCREAS 37 Missense_Mutation SNP T G uc004eej.1 RPS6KA6_uc011mq... Hybrid_Cap... view
SNX19 p.T176I 11 130785308 130785308 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc001qgk.3 SNX19_uc010sce.... Hybrid_Cap... view
TCL6 14 96135734 96135735 PSN1_PANCREAS 37 Intron Ins - T uc001yeq.2 TCL6_uc001yep.1... Hybrid_Cap...
TEC 4 48139307 48139310 PSN1_PANCREAS 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TGFB2 1 218519928 218519929 PSN1_PANCREAS 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TMEM123 11 102269398 102269398 PSN1_PANCREAS 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP53 p.K132Q 17 7578536 7578536 PSN1_PANCREAS 37 Missense_Mutation SNP T G uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIB1 p.R184Q 8 126445749 126445749 PSN1_PANCREAS 37 Missense_Mutation SNP G A uc003yrx.2 TRIB1_uc011lis.... Hybrid_Cap... view
TTN 2 179391639 179391640 PSN1_PANCREAS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
UBE2O 17 74392200 74392200 PSN1_PANCREAS 37 Intron Del C - uc002jrm.3 UBE2O_uc002jrn.... Hybrid_Cap...
UBR5 p.D1166N 8 103309763 103309763 PSN1_PANCREAS 37 Missense_Mutation SNP C T uc003ykr.1 UBR5_uc003yks.1... Hybrid_Cap... view
ULK4 p.R273K 3 41954377 41954377 PSN1_PANCREAS 37 Missense_Mutation SNP C T uc003ckv.3 ULK4_uc003ckw.2... Hybrid_Cap... view
URB2 p.H1512R 1 229795004 229795004 PSN1_PANCREAS 37 Missense_Mutation SNP A G uc001hts.1 URB2_uc009xfd.1... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 PSN1_PANCREAS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK3 p.Y333C 19 50492994 50492994 PSN1_PANCREAS 37 Missense_Mutation SNP T C uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap... view
WHSC1 p.A711D 4 1953953 1953953 PSN1_PANCREAS 37 Missense_Mutation SNP C A uc003gdz.3 WHSC1_uc003geb.... Hybrid_Cap... view