Annotation Summary for Cell Line: RCC10RGB  

Cell line primary name: RCC10RGB
Cell line aliases:
Gender:
Site Primary: kidney
Histology: carcinoma
Hist Subtype1: renal_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: BITTS_p_NCLE_RNA12_HG-U133_Plus_2_B06_698756
SNP arrays: QUAFF_p_NCLE_DNAAffy12_GenomeWideSNP_6_E05_592792
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in RCC10RGB

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 RCC10RGB_KIDNEY 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAMTS20 p.G1038S 12 43825284 43825284 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc010skx.1 ADAMTS20_uc001r... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 RCC10RGB_KIDNEY 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AURKC 19 57742531 57742532 RCC10RGB_KIDNEY 37 5'UTR Ins - C uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BAK1 6 33542918 33542918 RCC10RGB_KIDNEY 37 Intron SNP A G uc003oes.2 BAK1_uc003oer.2... Hybrid_Cap... view
BTG1 12 92537707 92537707 RCC10RGB_KIDNEY 37 3'UTR Del T - uc001tby.3 BTG1_uc001tbv.1... Hybrid_Cap...
CACNB2 10 18828721 18828722 RCC10RGB_KIDNEY 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CHRNA5 15 78885615 78885616 RCC10RGB_KIDNEY 37 3'UTR Ins - TA rs72534078 uc002bdy.2 CHRNA3_uc002bea... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 RCC10RGB_KIDNEY 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 RCC10RGB_KIDNEY 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
DIP2C p.A188T 10 468806 468806 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc001ifp.2 DIP2C_uc009xhk.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 RCC10RGB_KIDNEY 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 RCC10RGB_KIDNEY 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FBN1 p.D1244N 15 48776123 48776123 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc001zwx.1 Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 RCC10RGB_KIDNEY 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 RCC10RGB_KIDNEY 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLT4 5 180035183 180035185 RCC10RGB_KIDNEY 37 Intron Del AGT - uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap...
FN1 2 216244182 216244185 RCC10RGB_KIDNEY 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GRIA3 X 122318386 122318387 RCC10RGB_KIDNEY 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HNF1A 12 121434630 121434631 RCC10RGB_KIDNEY 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 RCC10RGB_KIDNEY 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 RCC10RGB_KIDNEY 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 RCC10RGB_KIDNEY 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LOC100130776 12 58122001 58122001 RCC10RGB_KIDNEY 37 3'UTR SNP G T uc001sps.3 AGAP2_uc001spo.... Hybrid_Cap... view
MAP3K1 p.T949del 5 56177849 56177851 RCC10RGB_KIDNEY 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 RCC10RGB_KIDNEY 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MCL1 1 150549737 150549744 RCC10RGB_KIDNEY 37 3'UTR Del GCTAG... - rs116997851 uc001euz.2 MCL1_uc010pch.1... Hybrid_Cap...
MELK p.E614K 9 36677218 36677218 RCC10RGB_KIDNEY 37 Missense_Mutation SNP G A uc003zzn.2 MELK_uc011lpm.1... Hybrid_Cap... view
MERTK p.N329S 2 112732891 112732891 RCC10RGB_KIDNEY 37 Missense_Mutation SNP A G rs34943572 uc002thk.1 MERTK_uc002thl.... Hybrid_Cap... view
MGC42105 p.E245Q 5 43280253 43280253 RCC10RGB_KIDNEY 37 Missense_Mutation SNP G C uc003jno.2 Hybrid_Cap... view
MLLT1 p.R348Q 19 6222199 6222199 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc002mek.2 Hybrid_Cap... view
MLLT6 17 36881916 36881916 RCC10RGB_KIDNEY 37 3'UTR SNP G A uc002hqi.3 MLLT6_uc002hqk.... Hybrid_Cap... view
MYH10 p.R1576K 17 8393815 8393815 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc002glm.2 MYH10_uc002gll.... Hybrid_Cap... view
MYH11 16 15797811 15797811 RCC10RGB_KIDNEY 37 3'UTR SNP G T rs75821286 uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 RCC10RGB_KIDNEY 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
NCAM1 11 112832307 112832308 RCC10RGB_KIDNEY 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 RCC10RGB_KIDNEY 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAPD3 p.L1168P 11 134037961 134037961 RCC10RGB_KIDNEY 37 Missense_Mutation SNP A G uc001qhd.1 NCAPD3_uc010scm... Hybrid_Cap... view
NEK10 3 27257314 27257314 RCC10RGB_KIDNEY 37 3'UTR SNP C T uc003cdt.1 NEK10_uc003cds.... Hybrid_Cap... view
NFIA 1 61921185 61921186 RCC10RGB_KIDNEY 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH1 p.G615R 9 139409995 139409995 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc004chz.2 NOTCH1_uc004cia... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881820 50881821 RCC10RGB_KIDNEY 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAWR p.R220K 12 80007379 80007379 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc001syx.2 Hybrid_Cap... view
PAX3 2 223066017 223066018 RCC10RGB_KIDNEY 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 RCC10RGB_KIDNEY 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDK1 2 173460743 173460743 RCC10RGB_KIDNEY 37 3'UTR SNP A G rs70937078 uc002uhq.1 PDK1_uc010zdz.1... Hybrid_Cap... view
PGGT1B 5 114548071 114548072 RCC10RGB_KIDNEY 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PGR 11 100933598 100933599 RCC10RGB_KIDNEY 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3CB p.L933P 3 138376676 138376676 RCC10RGB_KIDNEY 37 Missense_Mutation SNP A G uc011bmq.1 PIK3CB_uc011bmn... Hybrid_Cap... view
PLAG1 p.S485T 8 57078851 57078851 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C G uc003xsq.3 PLAG1_uc003xsr.... Hybrid_Cap... view
PLCG2 p.R74L 16 81888076 81888076 RCC10RGB_KIDNEY 37 Missense_Mutation SNP G T uc002fgt.2 PLCG2_uc010chg.... Hybrid_Cap... view
PMS1 2 190670539 190670540 RCC10RGB_KIDNEY 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKDC p.Q1584R 8 48798530 48798530 RCC10RGB_KIDNEY 37 Missense_Mutation SNP T C uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 RCC10RGB_KIDNEY 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 RCC10RGB_KIDNEY 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
ROBO2 p.F227C 3 77542407 77542407 RCC10RGB_KIDNEY 37 Missense_Mutation SNP T G uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap... view
RPN1 p.Y349C 3 128345666 128345666 RCC10RGB_KIDNEY 37 Missense_Mutation SNP T C uc003ekr.1 RPN1_uc011bkq.1... Hybrid_Cap... view
SGK269 p.Q704R 15 77472158 77472158 RCC10RGB_KIDNEY 37 Missense_Mutation SNP T C uc002bcm.2 SGK269_uc002bcn... Hybrid_Cap... view
SPEN p.K1144fs 1 16256165 16256165 RCC10RGB_KIDNEY 37 Frame_Shift_Del Del A - uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap...
STK31 7 23872024 23872025 RCC10RGB_KIDNEY 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STK39 p.G221S 2 168997236 168997236 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C T uc002uea.2 Hybrid_Cap... view
TAOK3 p.R898I 12 118588806 118588806 RCC10RGB_KIDNEY 37 Missense_Mutation SNP C A uc001twx.2 TAOK3_uc001twv.... Hybrid_Cap... view
TEC 4 48139307 48139310 RCC10RGB_KIDNEY 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TGFB2 1 218519928 218519929 RCC10RGB_KIDNEY 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TMEM123 11 102269398 102269398 RCC10RGB_KIDNEY 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TRPS1 8 116635872 116635873 RCC10RGB_KIDNEY 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTBK1 p.E771del 6 43250726 43250728 RCC10RGB_KIDNEY 37 In_Frame_Del Del GAA - uc003ouq.1 Hybrid_Cap...
TTN 2 179391639 179391640 RCC10RGB_KIDNEY 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.I17265L 2 179457235 179457235 RCC10RGB_KIDNEY 37 Missense_Mutation SNP T G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 RCC10RGB_KIDNEY 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
XIAP p.E350del X 123025155 123025157 RCC10RGB_KIDNEY 37 In_Frame_Del Del GAG - uc010nqu.2 XIAP_uc004etx.2... Hybrid_Cap...