Annotation Summary for Cell Line: RT4  

Cell line primary name: RT4
Cell line aliases:
Gender: M
Site Primary: urinary_tract
Histology: carcinoma
Hist Subtype1: transitional_cell_carcinoma
Notes:
Source: ATCC
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_H02_296160
SNP arrays: FASTS_p_NCLE_DNAAffy4_S_GenomeWideSNP_6_D09_335276
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in RT4

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 RT4_URINARY_TRA... 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABCC3 p.L531R 17 48745075 48745075 RT4_URINARY_TRA... 37 Missense_Mutation SNP T G uc002isl.2 ABCC3_uc002isk.... Hybrid_Cap... view
ACACA 17 35766564 35766564 RT4_URINARY_TRA... 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM28 8 24211994 24211997 RT4_URINARY_TRA... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 RT4_URINARY_TRA... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 RT4_URINARY_TRA... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
AKAP9 7 91670318 91670319 RT4_URINARY_TRA... 37 Intron Ins - T rs66490357 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 RT4_URINARY_TRA... 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 RT4_URINARY_TRA... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ARID1A 1 27107263 27107264 RT4_URINARY_TRA... 37 3'UTR Ins - C rs3841356 uc001bmv.1 ARID1A_uc001bmu... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 RT4_URINARY_TRA... 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
ATP10A p.N916D 15 25947077 25947077 RT4_URINARY_TRA... 37 Missense_Mutation SNP T C uc010ayu.2 Hybrid_Cap... view
BAP1 p.Y401* 3 52438516 52438516 RT4_URINARY_TRA... 37 Nonsense_Mutation SNP A C uc003ddx.2 BAP1_uc003ddw.2... Hybrid_Cap... view
BAP1 p.Y401D 3 52438518 52438518 RT4_URINARY_TRA... 37 Missense_Mutation SNP A C uc003ddx.2 BAP1_uc003ddw.2... Hybrid_Cap... view
BCL2L2 14 23778225 23778225 RT4_URINARY_TRA... 37 3'UTR SNP A T uc001wjg.3 PABPN1_uc001wjh... Hybrid_Cap... view
BCL3 19 45262965 45262965 RT4_URINARY_TRA... 37 3'UTR Del C - uc010xxe.1 Hybrid_Cap...
BCR 22 23631813 23631814 RT4_URINARY_TRA... 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BRD2 p.P58H 6 32942382 32942382 RT4_URINARY_TRA... 37 Missense_Mutation SNP C A uc010juh.2 BRD2_uc003ocn.3... Hybrid_Cap... view
BRD4 19 15360017 15360017 RT4_URINARY_TRA... 37 Intron SNP T C uc002nar.2 BRD4_uc002nas.2... Hybrid_Cap... view
CDK11B 1 1654066 1654068 RT4_URINARY_TRA... 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CDKN1A 6 36653760 36653761 RT4_URINARY_TRA... 37 3'UTR Ins - A uc011dtq.1 CDKN1A_uc003omm... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 RT4_URINARY_TRA... 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHD8 14 21853630 21853630 RT4_URINARY_TRA... 37 3'UTR Del T - rs78520772 uc001was.1 CHD8_uc001war.1... Hybrid_Cap...
CHIC2 4 54876132 54876132 RT4_URINARY_TRA... 37 3'UTR Del C - rs4437313 uc003haj.1 PDGFRA_uc003haa... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 RT4_URINARY_TRA... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 RT4_URINARY_TRA... 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 RT4_URINARY_TRA... 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CUBN p.R2476Q 10 16955916 16955916 RT4_URINARY_TRA... 37 Missense_Mutation SNP C T uc001ioo.2 Hybrid_Cap... view
DACH1 13 72014625 72014626 RT4_URINARY_TRA... 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DDR2 1 162750211 162750212 RT4_URINARY_TRA... 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DNAH8 6 38952245 38952246 RT4_URINARY_TRA... 37 Intron Del TG - rs34819199 uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
DYRK1A 21 38884966 38884967 RT4_URINARY_TRA... 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EDN1 6 12290729 12290729 RT4_URINARY_TRA... 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF2AK2 p.V259fs 2 37362636 37362636 RT4_URINARY_TRA... 37 Frame_Shift_Del Del A - uc010ynh.1 EIF2AK2_uc010fa... Hybrid_Cap...
EIF4E 4 99808137 99808141 RT4_URINARY_TRA... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EPHA6 3 97467610 97467611 RT4_URINARY_TRA... 37 3'UTR Ins - CT uc010how.1 Hybrid_Cap...
EPHB6 p.P511P 7 142564309 142564309 RT4_URINARY_TRA... 37 Silent SNP C T uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap... view
ETV1 7 14028708 14028708 RT4_URINARY_TRA... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 RT4_URINARY_TRA... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 RT4_URINARY_TRA... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 RT4_URINARY_TRA... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GATS 7 99798640 99798640 RT4_URINARY_TRA... 37 3'UTR SNP G C uc003uua.3 STAG3_uc010lgs.... Hybrid_Cap... view
GLTSCR1 p.V480I 19 48183865 48183865 RT4_URINARY_TRA... 37 Missense_Mutation SNP G A uc002phh.3 GLTSCR1_uc002ph... Hybrid_Cap... view
GRIA3 X 122318386 122318387 RT4_URINARY_TRA... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GTSE1 p.G56R 22 46704244 46704244 RT4_URINARY_TRA... 37 Missense_Mutation SNP G A uc011aqy.1 GTSE1_uc011aqz.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 RT4_URINARY_TRA... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 RT4_URINARY_TRA... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90B1 12 104341645 104341648 RT4_URINARY_TRA... 37 3'UTR Del ACTG - rs2307842 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 RT4_URINARY_TRA... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB4 17 73753682 73753682 RT4_URINARY_TRA... 37 3'UTR SNP G A uc002jpg.2 ITGB4_uc002jph.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 RT4_URINARY_TRA... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 RT4_URINARY_TRA... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LRP6 12 12419728 12419728 RT4_URINARY_TRA... 37 5'UTR SNP G A uc001rah.3 LRP6_uc010shl.1... Hybrid_Cap... view
LRRC7 p.G1464R 1 70555461 70555461 RT4_URINARY_TRA... 37 Missense_Mutation SNP G A uc001dep.2 LRRC7_uc009wbg.... Hybrid_Cap... view
MAF 16 79628537 79628537 RT4_URINARY_TRA... 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAF 16 79628325 79628325 RT4_URINARY_TRA... 37 3'UTR Del A - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAMDC4 p.G208D 9 139748481 139748481 RT4_URINARY_TRA... 37 Missense_Mutation SNP G A uc004cjs.2 MAMDC4_uc011mej... Hybrid_Cap... view
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 RT4_URINARY_TRA... 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 RT4_URINARY_TRA... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 RT4_URINARY_TRA... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 RT4_URINARY_TRA... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 p.A1199del 6 161519351 161519353 RT4_URINARY_TRA... 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MAP3K7 6 91226137 91226138 RT4_URINARY_TRA... 37 3'UTR Ins - ATG uc003pnz.1 MAP3K7_uc003pny... Hybrid_Cap...
MAPK3 p.A109A 16 30133171 30133171 RT4_URINARY_TRA... 37 Silent SNP C T uc002dws.2 BOLA2_uc010bzb.... Hybrid_Cap... view
MAPK8 p.H149R 10 49618207 49618207 RT4_URINARY_TRA... 37 Missense_Mutation SNP A G uc009xnz.2 MAPK8_uc001jgl.... Hybrid_Cap... view
MAPKAPK3 3 50685575 50685575 RT4_URINARY_TRA... 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MARK3 p.D210N 14 103931981 103931981 RT4_URINARY_TRA... 37 Missense_Mutation SNP G A uc001ymz.3 MARK3_uc001ymx.... Hybrid_Cap... view
MGA p.V1993F 15 42041782 42041782 RT4_URINARY_TRA... 37 Missense_Mutation SNP G T rs61754768 uc010ucy.1 MGA_uc010ucz.1_... Hybrid_Cap... view
NCAM1 11 112832307 112832308 RT4_URINARY_TRA... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 RT4_URINARY_TRA... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.QQQ1272del 20 46279815 46279823 RT4_URINARY_TRA... 37 In_Frame_Del Del GCAGC... - uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 RT4_URINARY_TRA... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK9 p.V724A 14 75563805 75563805 RT4_URINARY_TRA... 37 Missense_Mutation SNP A G uc001xrl.2 NEK9_uc001xrk.2... Hybrid_Cap... view
NFIA 1 61921185 61921186 RT4_URINARY_TRA... 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH3 p.P844S 19 15295142 15295143 RT4_URINARY_TRA... 37 Missense_Mutation DNP GG AA uc002nan.2 NOTCH3_uc002nao... Hybrid_Cap...
NOTCH4 p.C733S 6 32181587 32181587 RT4_URINARY_TRA... 37 Missense_Mutation SNP C G uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap... view
NPM1 5 170837734 170837734 RT4_URINARY_TRA... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 RT4_URINARY_TRA... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
PAX3 2 223158653 223158653 RT4_URINARY_TRA... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX5 9 37034081 37034081 RT4_URINARY_TRA... 37 5'UTR SNP G T uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap... view
PAXIP1 p.S79S 7 154785459 154785459 RT4_URINARY_TRA... 37 Silent SNP G A uc003wlp.2 PAXIP1_uc003wlq... Hybrid_Cap... view
PGR 11 100933598 100933599 RT4_URINARY_TRA... 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 RT4_URINARY_TRA... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PLK2 5 57755013 57755013 RT4_URINARY_TRA... 37 Intron SNP C A rs79105101 uc003jrn.2 PLK2_uc011cql.1... Hybrid_Cap... view
PPARG p.T475M 3 12475550 12475550 RT4_URINARY_TRA... 37 Missense_Mutation SNP C T uc003bwx.2 PPARG_uc003bwr.... Hybrid_Cap... view
PRKD3 2 37480319 37480320 RT4_URINARY_TRA... 37 Stop_Codon_Ins Ins - T rs79875666 uc002rqd.2 Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 RT4_URINARY_TRA... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPRT p.P599fs 20 40979337 40979337 RT4_URINARY_TRA... 37 Frame_Shift_Del Del G - uc010ggj.2 PTPRT_uc002xkg.... Hybrid_Cap...
RELA p.A549A 11 65421891 65421891 RT4_URINARY_TRA... 37 Silent SNP C T uc010ron.1 RELA_uc001ofg.2... Hybrid_Cap... view
RHOA p.A161V 3 49397742 49397742 RT4_URINARY_TRA... 37 Missense_Mutation SNP G A rs11552757 uc003cwu.2 RHOA_uc010hku.2... Hybrid_Cap... view
RPS6KL1 14 75373626 75373627 RT4_URINARY_TRA... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SGK223 p.L845fs 8 8185756 8185757 RT4_URINARY_TRA... 37 Frame_Shift_Ins Ins - CA uc003wsh.3 Hybrid_Cap...
SLC6A8 X 152957656 152957657 RT4_URINARY_TRA... 37 Intron Ins - A uc004fib.3 SLC6A8_uc004fic... Hybrid_Cap...
SPEN p.D1419G 1 16256991 16256991 RT4_URINARY_TRA... 37 Missense_Mutation SNP A G uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap... view
STK25 2 242435659 242435662 RT4_URINARY_TRA... 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 RT4_URINARY_TRA... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TMEM123 11 102269398 102269398 RT4_URINARY_TRA... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNFRSF10B p.G250_splice 8 22885843 22885843 RT4_URINARY_TRA... 37 Splice_Site_SNP SNP C T rs41308110 uc003xcu.2 TNFRSF10B_uc003... Hybrid_Cap... view
TNNI3K p.R582* 1 74834917 74834917 RT4_URINARY_TRA... 37 Nonsense_Mutation SNP C T uc001dge.1 TNNI3K_uc001dgc... Hybrid_Cap... view
TP63 3 189507518 189507519 RT4_URINARY_TRA... 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TPR p.T1899S 1 186296786 186296786 RT4_URINARY_TRA... 37 Missense_Mutation SNP T A uc001grv.2 Hybrid_Cap... view
TSC1 p.L557fs 9 135781296 135781296 RT4_URINARY_TRA... 37 Frame_Shift_Del Del G - rs118203555 uc004cca.2 TSC1_uc004ccb.3... Hybrid_Cap...
TSSK3 1 32828192 32828192 RT4_URINARY_TRA... 37 5'UTR SNP G A uc001bvf.2 Hybrid_Cap... view
TTN p.P24501Q 2 179429653 179429653 RT4_URINARY_TRA... 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.G13152S 2 179483027 179483027 RT4_URINARY_TRA... 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
WRN p.M387V 8 30938702 30938702 RT4_URINARY_TRA... 37 Missense_Mutation SNP A G uc003xio.3 WRN_uc011lbd.1_... Hybrid_Cap... view