Annotation Summary for Cell Line: SNU-387  

Cell line primary name: SNU-387
Cell line aliases: NCI-SNU-387
Gender: F
Site Primary: liver
Histology: carcinoma
Hist Subtype1: hepatocellular_carcinoma
Notes:
Source: ATCC
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_G10_383606
SNP arrays: LOBBY_p_NCLE_DNAAffy6_GenomeWideSNP_6_B05_437304
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in SNU-387

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 SNU387_LIVER 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 SNU387_LIVER 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKT2 19 40748633 40748633 SNU387_LIVER 37 Intron SNP C A rs17846838 uc002onf.2 AKT2_uc010egs.2... Hybrid_Cap... view
ALPK1 4 113347609 113347610 SNU387_LIVER 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 SNU387_LIVER 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ANAPC5 12 121790242 121790242 SNU387_LIVER 37 5'UTR SNP A C uc001uag.2 ANAPC5_uc001uah... Hybrid_Cap... view
ARNT 1 150784417 150784417 SNU387_LIVER 37 3'UTR SNP T A uc001evr.1 ARNT_uc010pck.1... Hybrid_Cap... view
ARNT p.P706L 1 150785811 150785811 SNU387_LIVER 37 Missense_Mutation SNP G A rs2275237 uc001evr.1 ARNT_uc010pck.1... Hybrid_Cap... view
ATF2 p.T283S 2 175962302 175962302 SNU387_LIVER 37 Missense_Mutation SNP G C uc002ujl.2 ATF2_uc010fqv.2... Hybrid_Cap... view
BCL3 19 45262965 45262965 SNU387_LIVER 37 3'UTR Del C - uc010xxe.1 Hybrid_Cap...
CAMKK2 12 121698269 121698269 SNU387_LIVER 37 Intron SNP A G uc001tzu.2 CAMKK2_uc001tzt... Hybrid_Cap... view
CARD10 p.KE272del 22 37906309 37906314 SNU387_LIVER 37 In_Frame_Del Del CTCCT... - uc003asx.1 CARD10_uc003ast... Hybrid_Cap...
CD40 p.I134V 20 44751392 44751392 SNU387_LIVER 37 Missense_Mutation SNP A G rs61760052 uc002xrg.1 CD40_uc002xrf.1... Hybrid_Cap... view
CDK20 p.E173K 9 90585529 90585529 SNU387_LIVER 37 Missense_Mutation SNP C T uc004apr.2 CDK20_uc004aps.... Hybrid_Cap... view
CFI p.D283G 4 110681461 110681461 SNU387_LIVER 37 Missense_Mutation SNP T C uc011cft.1 CFI_uc003hzq.2_... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 SNU387_LIVER 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 SNU387_LIVER 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CTNNA2 p.K55E 2 79971573 79971573 SNU387_LIVER 37 Missense_Mutation SNP A G uc010ysh.1 CTNNA2_uc010yse... Hybrid_Cap... view
CXCL12 10 44873992 44873993 SNU387_LIVER 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DGKB 7 14216330 14216332 SNU387_LIVER 37 Intron Del AAC - uc003ssz.2 DGKB_uc011jxt.1... Hybrid_Cap...
ERC1 12 1192319 1192319 SNU387_LIVER 37 Intron SNP C A uc001qjb.2 ERC1_uc001qiz.2... Hybrid_Cap... view
ETV1 7 14028708 14028708 SNU387_LIVER 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 SNU387_LIVER 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 SNU387_LIVER 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 SNU387_LIVER 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 SNU387_LIVER 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 SNU387_LIVER 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HERC2 p.P1772L 15 28473513 28473513 SNU387_LIVER 37 Missense_Mutation SNP G A uc001zbj.2 Hybrid_Cap... view
HGF p.K78Q 7 81392045 81392045 SNU387_LIVER 37 Missense_Mutation SNP T G uc003uhl.2 HGF_uc003uhm.2_... Hybrid_Cap... view
HOXA11 7 27222406 27222406 SNU387_LIVER 37 3'UTR SNP G A uc003syx.2 HOXA10_uc003syw... Hybrid_Cap... view
HSP90AB1 p.T637M 6 44220960 44220960 SNU387_LIVER 37 Missense_Mutation SNP C T uc003oxa.1 HSP90AB1_uc011d... Hybrid_Cap... view
IKBKB p.T344M 8 42174328 42174328 SNU387_LIVER 37 Missense_Mutation SNP C T uc003xow.1 IKBKB_uc003xov.... Hybrid_Cap... view
ILK 11 6630029 6630029 SNU387_LIVER 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 SNU387_LIVER 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KTN1 p.T1316_splice 14 56145163 56145163 SNU387_LIVER 37 Splice_Site_SNP SNP G T uc001xcb.2 KTN1_uc001xce.2... Hybrid_Cap... view
LRP2 p.A641V 2 170131599 170131599 SNU387_LIVER 37 Missense_Mutation SNP G A uc002ues.2 LRP2_uc010zdf.1... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 SNU387_LIVER 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 SNU387_LIVER 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 SNU387_LIVER 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAST4 p.R1449W 5 66459919 66459919 SNU387_LIVER 37 Missense_Mutation SNP C T uc003jut.1 MAST4_uc003juw.... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 SNU387_LIVER 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
NCAM1 11 112832307 112832308 SNU387_LIVER 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 SNU387_LIVER 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK8 p.I145V 17 27061969 27061969 SNU387_LIVER 37 Missense_Mutation SNP A G uc002hcp.2 Hybrid_Cap... view
NFIA 1 61921185 61921186 SNU387_LIVER 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH1 p.G289_splice 9 139413893 139413893 SNU387_LIVER 37 Splice_Site_SNP SNP G A uc004chz.2 Hybrid_Cap... view
NPR1 1 153665919 153665920 SNU387_LIVER 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 SNU387_LIVER 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NRAS p.Q61K 1 115256530 115256530 SNU387_LIVER 37 Missense_Mutation SNP G T uc009wgu.2 Hybrid_Cap... view
PAX3 2 223066017 223066018 SNU387_LIVER 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 SNU387_LIVER 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.R571C 1 144916644 144916644 SNU387_LIVER 37 Missense_Mutation SNP G A rs112651497 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDE4DIP p.E243fs 1 144923729 144923729 SNU387_LIVER 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGGT1B 5 114548072 114548072 SNU387_LIVER 37 3'UTR SNP C G uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap... view
PIK3C2A 11 17111198 17111199 SNU387_LIVER 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 SNU387_LIVER 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PKHD1 p.F515I 6 51921747 51921747 SNU387_LIVER 37 Missense_Mutation SNP A T uc003pah.1 PKHD1_uc003pai.... Hybrid_Cap... view
PPARGC1A p.E747D 4 23803405 23803405 SNU387_LIVER 37 Missense_Mutation SNP C G uc003gqs.2 PPARGC1A_uc003g... Hybrid_Cap... view
PRKCZ 1 2087586 2087586 SNU387_LIVER 37 Intron SNP C T uc001aiq.2 PRKCZ_uc001air.... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 SNU387_LIVER 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RET p.G798_splice 10 43613929 43613929 SNU387_LIVER 37 Splice_Site_SNP SNP G C uc001jal.2 RET_uc001jak.1_... Hybrid_Cap... view
RGS22 p.K334fs 8 101075994 101075995 SNU387_LIVER 37 Frame_Shift_Del Del CT - uc003yjb.1 RGS22_uc003yja.... Hybrid_Cap...
ROBO2 3 77666937 77666937 SNU387_LIVER 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
SACS p.L51L 13 23949278 23949278 SNU387_LIVER 37 Silent SNP G A uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
SP1 p.N217S 12 53776381 53776381 SNU387_LIVER 37 Missense_Mutation SNP A G uc001scw.2 SP1_uc010sog.1_... Hybrid_Cap... view
STK31 7 23872024 23872025 SNU387_LIVER 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TLK2 p.Q37H 17 60598163 60598163 SNU387_LIVER 37 Missense_Mutation SNP G C uc010ddp.2 TLK2_uc002izx.3... Hybrid_Cap... view
TNNI3K p.D252H 1 74797140 74797140 SNU387_LIVER 37 Missense_Mutation SNP G C rs34874695 uc001dge.1 TNNI3K_uc001dgc... Hybrid_Cap... view
TP53 p.K164* 17 7578440 7578440 SNU387_LIVER 37 Nonsense_Mutation SNP T A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM67 p.R777W 1 231351163 231351163 SNU387_LIVER 37 Missense_Mutation SNP C T uc009xfn.1 Hybrid_Cap... view
TRPM6 p.P1250T 9 77377839 77377839 SNU387_LIVER 37 Missense_Mutation SNP G T uc004ajl.1 TRPM6_uc004ajk.... Hybrid_Cap... view
TRPS1 8 116635872 116635873 SNU387_LIVER 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TRRAP p.Q530P 7 98507917 98507917 SNU387_LIVER 37 Missense_Mutation SNP A C uc003upp.2 TRRAP_uc011kis.... Hybrid_Cap... view
TTN 2 179391639 179391640 SNU387_LIVER 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.W26395C 2 179423297 179423297 SNU387_LIVER 37 Missense_Mutation SNP C A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 SNU387_LIVER 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK3 p.SCSPQKT127del 19 50510972 50510992 SNU387_LIVER 37 In_Frame_Del Del CTGGT... - rs117711287;rs117077533 uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap...
WNK1 p.P1737A 12 995179 995179 SNU387_LIVER 37 Missense_Mutation SNP C G uc001qio.3 WNK1_uc001qip.3... Hybrid_Cap... view