Annotation Summary for Cell Line: SW1463  

Cell line primary name: SW1463
Cell line aliases:
Gender: F
Site Primary: large_intestine
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: ATCC
Expression arrays: BRAKE_p_NCLE_RNA2_HG-U133_Plus_2_B05_241074
SNP arrays: LIMPS_p_NCLE_DNA2N_GenomeWideSNP_6_E09_246722
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in SW1463

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ACACA 17 35766564 35766564 SW1463_LARGE_IN... 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM28 8 24211994 24211997 SW1463_LARGE_IN... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAM29 p.L691del 4 175898744 175898746 SW1463_LARGE_IN... 37 In_Frame_Del Del TTA - uc003iuc.2 ADAM29_uc003iud... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 SW1463_LARGE_IN... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
AKT3 p.P466L 1 243668594 243668594 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc001iab.1 AKT3_uc001hzz.1... Hybrid_Cap... view
ALPK1 4 113347609 113347610 SW1463_LARGE_IN... 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
APC p.A449fs 5 112157627 112157628 SW1463_LARGE_IN... 37 Frame_Shift_Del Del TG - uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap...
ASPH p.A264_splice 8 62550924 62550925 SW1463_LARGE_IN... 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
ATRX p.N2202Y X 76813017 76813017 SW1463_LARGE_IN... 37 Missense_Mutation SNP T A uc004ecp.3 ATRX_uc004ecq.3... Hybrid_Cap... view
ATRX p.1459_1460EE>E X 76907782 76907784 SW1463_LARGE_IN... 37 In_Frame_Del Del TCC - uc004ecp.3 ATRX_uc004ecq.3... Hybrid_Cap...
AXIN1 16 337880 337881 SW1463_LARGE_IN... 37 3'UTR Ins - T uc002cgp.1 AXIN1_uc002cgq.... Hybrid_Cap...
BCL3 19 45262965 45262965 SW1463_LARGE_IN... 37 3'UTR Del C - uc010xxe.1 Hybrid_Cap...
BMP4 14 54416601 54416602 SW1463_LARGE_IN... 37 3'UTR Ins - AT rs74495140;rs76335800 uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap...
BRD2 6 32948599 32948599 SW1463_LARGE_IN... 37 3'UTR Del C - uc010juh.2 BRD2_uc003ocn.3... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 SW1463_LARGE_IN... 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHD9 p.2164_2165SS>S 16 53338410 53338412 SW1463_LARGE_IN... 37 In_Frame_Del Del TTC - uc002ehb.2 CHD9_uc002egy.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 SW1463_LARGE_IN... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196673 19196674 SW1463_LARGE_IN... 37 Intron Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 SW1463_LARGE_IN... 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CYLD 16 50830558 50830558 SW1463_LARGE_IN... 37 3'UTR SNP G A uc002egp.1 CYLD_uc002egq.1... Hybrid_Cap... view
DACH1 13 72014625 72014626 SW1463_LARGE_IN... 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DNAH8 6 38952247 38952250 SW1463_LARGE_IN... 37 Intron Del CACA - uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
DYRK1A 21 38884966 38884967 SW1463_LARGE_IN... 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EIF3A p.R1097Q 10 120801742 120801742 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc001ldu.2 EIF3A_uc010qsu.... Hybrid_Cap... view
EPHA5 4 66189753 66189754 SW1463_LARGE_IN... 37 3'UTR Ins - T rs67487372 uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap...
ERN1 p.D507N 17 62133188 62133188 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc002jdz.2 Hybrid_Cap... view
ETV1 7 14028708 14028708 SW1463_LARGE_IN... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
EXT1 8 118811807 118811807 SW1463_LARGE_IN... 37 3'UTR Del T - uc003yok.1 Hybrid_Cap...
FBXW7 p.R479Q 4 153247366 153247366 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc003ims.2 FBXW7_uc011cii.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 SW1463_LARGE_IN... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 SW1463_LARGE_IN... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 SW1463_LARGE_IN... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLT1 p.E984* 13 28896930 28896930 SW1463_LARGE_IN... 37 Nonsense_Mutation SNP C A uc001usb.3 FLT1_uc010aap.2... Hybrid_Cap... view
FN1 2 216244182 216244185 SW1463_LARGE_IN... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GHR 5 42719562 42719562 SW1463_LARGE_IN... 37 3'UTR SNP A T uc003jmt.2 GHR_uc011cpq.1_... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 SW1463_LARGE_IN... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRAMD1B p.Y396F 11 123479448 123479448 SW1463_LARGE_IN... 37 Missense_Mutation SNP A T uc001pyw.2 GRAMD1B_uc001py... Hybrid_Cap... view
GRIA3 X 122318386 122318387 SW1463_LARGE_IN... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 SW1463_LARGE_IN... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 SW1463_LARGE_IN... 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HIP1 p.T751I 7 75182795 75182795 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc003uds.1 HIP1_uc011kfz.1... Hybrid_Cap... view
HIPK3 p.E241K 11 33308681 33308681 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc001mul.1 HIPK3_uc001mum.... Hybrid_Cap... view
ILK 11 6630029 6630029 SW1463_LARGE_IN... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
KLK7 19 51480672 51480675 SW1463_LARGE_IN... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KRAS p.G12C 12 25398285 25398285 SW1463_LARGE_IN... 37 Missense_Mutation SNP C A uc001rgp.1 KRAS_uc001rgq.1... Hybrid_Cap... view
LRP1B p.V4412A 2 141027823 141027823 SW1463_LARGE_IN... 37 Missense_Mutation SNP A G uc002tvj.1 Hybrid_Cap... view
LRRK2 p.N202S 12 40634318 40634318 SW1463_LARGE_IN... 37 Missense_Mutation SNP A G uc001rmg.3 Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 SW1463_LARGE_IN... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 SW1463_LARGE_IN... 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 SW1463_LARGE_IN... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K10 p.R413C 19 40711866 40711866 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc002ona.2 MAP3K10_uc002on... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 SW1463_LARGE_IN... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
NAV3 p.S1224T 12 78513646 78513646 SW1463_LARGE_IN... 37 Missense_Mutation SNP T A uc001syp.2 NAV3_uc001syo.2... Hybrid_Cap... view
NCAM1 11 112832307 112832308 SW1463_LARGE_IN... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 SW1463_LARGE_IN... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 SW1463_LARGE_IN... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPM1 5 170837734 170837734 SW1463_LARGE_IN... 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 SW1463_LARGE_IN... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 SW1463_LARGE_IN... 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP98 p.P500S 11 3756465 3756465 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc001lyh.2 NUP98_uc001lyi.... Hybrid_Cap... view
OBSCN p.E526K 1 228402547 228402547 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap... view
PAX3 2 223158653 223158653 SW1463_LARGE_IN... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX5 p.P215P 9 36966681 36966681 SW1463_LARGE_IN... 37 Silent SNP C T uc003zzo.1 PAX5_uc011lpt.1... Hybrid_Cap... view
PAX5 9 37034081 37034081 SW1463_LARGE_IN... 37 5'UTR SNP G T uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap... view
PBX1 p.Q104* 1 164761775 164761775 SW1463_LARGE_IN... 37 Nonsense_Mutation SNP C T uc001gct.2 PBX1_uc010pku.1... Hybrid_Cap... view
PCM1 p.N427T 8 17810687 17810687 SW1463_LARGE_IN... 37 Missense_Mutation SNP A C uc003wyi.3 PCM1_uc011kyh.1... Hybrid_Cap... view
PDE4DIP p.Q1665fs 1 144873963 144873963 SW1463_LARGE_IN... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 SW1463_LARGE_IN... 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 SW1463_LARGE_IN... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3R4 p.P876L 3 130425886 130425886 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc003enj.2 Hybrid_Cap... view
PIKFYVE p.P300P 2 209153531 209153531 SW1463_LARGE_IN... 37 Silent SNP T A uc002vcz.2 PIKFYVE_uc010fu... Hybrid_Cap... view
PRKAA2 p.S519F 1 57173283 57173283 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc001cyk.3 Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 SW1463_LARGE_IN... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 SW1463_LARGE_IN... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
ROS1 p.R1286H 6 117678076 117678076 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc003pxp.1 ROS1_uc011ebi.1... Hybrid_Cap... view
RPS6KL1 14 75373626 75373627 SW1463_LARGE_IN... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SMAD4 p.R361G 18 48591918 48591918 SW1463_LARGE_IN... 37 Missense_Mutation SNP C G rs80338963 uc010xdp.1 SMAD4_uc002lfb.... Hybrid_Cap... view
STAT1 p.V642I 2 191841701 191841701 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc002usj.2 STAT1_uc010fse.... Hybrid_Cap... view
STK10 p.D716N 5 171488209 171488209 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc003mbo.1 Hybrid_Cap... view
STK31 7 23872024 23872025 SW1463_LARGE_IN... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STK35 p.N324S 20 2097390 2097390 SW1463_LARGE_IN... 37 Missense_Mutation SNP A G uc010gak.2 STK35_uc010zpu.... Hybrid_Cap... view
SUZ12 p.R508C 17 30321667 30321667 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc002hgs.2 SUZ12_uc002hgt.... Hybrid_Cap... view
TACC3 p.V577M 4 1737542 1737542 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc003gdo.2 TACC3_uc010ibz.... Hybrid_Cap... view
TMEM123 11 102269398 102269398 SW1463_LARGE_IN... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TMEM123 11 102269461 102269461 SW1463_LARGE_IN... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP53 p.R248Q 17 7577538 7577538 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T rs11540652 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRPS1 8 116635872 116635873 SW1463_LARGE_IN... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTK p.S389F 6 80732098 80732098 SW1463_LARGE_IN... 37 Missense_Mutation SNP C T uc003pjc.2 TTK_uc003pjb.3_... Hybrid_Cap... view
TTN p.L24766I 2 179428859 179428860 SW1463_LARGE_IN... 37 Missense_Mutation DNP GA TT uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.L5859M 2 179588679 179588679 SW1463_LARGE_IN... 37 Missense_Mutation SNP A T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
ULK1 p.R603Q 12 132400634 132400634 SW1463_LARGE_IN... 37 Missense_Mutation SNP G A uc001uje.2 Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 SW1463_LARGE_IN... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK3 p.S78* 19 50512549 50512549 SW1463_LARGE_IN... 37 Nonsense_Mutation SNP G C uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap... view
VRK3 p.S54Y 19 50512621 50512621 SW1463_LARGE_IN... 37 Missense_Mutation SNP G T uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap... view
VRK3 p.S48* 19 50512639 50512639 SW1463_LARGE_IN... 37 Nonsense_Mutation SNP G C uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap... view
XPO4 p.S498_splice 13 21382722 21382722 SW1463_LARGE_IN... 37 Splice_Site_SNP SNP T A uc001unq.3 Hybrid_Cap... view
ZBTB16 11 114121358 114121358 SW1463_LARGE_IN... 37 3'UTR SNP T A uc001pop.2 ZBTB16_uc001poq... Hybrid_Cap... view